Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73360 493 / 4e-167 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 476 / 6e-161 HD HDG12 homeodomain GLABROUS 12 (.1) AT3G03260 454 / 5e-152 HD HDG8 homeodomain GLABROUS 8 (.1) AT4G04890 434 / 1e-143 HD PDF2 protodermal factor 2 (.1) AT1G05230 422 / 2e-139 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G21750 415 / 4e-136 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G17320 411 / 3e-135 HD HDG9 homeodomain GLABROUS 9 (.1) AT1G34650 407 / 1e-133 HD HDG10 homeodomain GLABROUS 10 (.1) AT3G61150 365 / 2e-116 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 363 / 1e-115 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074800 [exp] 886 / 0 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.015G034100 [exp] 575 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 566 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.014G152000 [exp] 429 / 1e-141 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 426 / 2e-140 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 424 / 2e-140 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 423 / 6e-140 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 416 / 9e-136 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 404 / 3e-131 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031321 [exp] 561 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10031892 [exp] 482 / 5e-164 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10027175 [exp] 424 / 6e-139 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 422 / 5e-138 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10007650 [exp] 418 / 1e-137 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 400 / 4e-131 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10006765 [exp] 398 / 5e-130 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10018359 [exp] 378 / 4e-125 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10037554 [exp] 328 / 7e-103 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Lus10036567 [exp] 328 / 2e-102 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.017G144601.2 pacid=42814195 polypeptide=Potri.017G144601.2.p locus=Potri.017G144601 ID=Potri.017G144601.2.v4.1 annot-version=v4.1 ATGAAAAACGTGATTTGCCCAGCTTGTGGAGGACACCCTTTCGGAGAAGAAGAACGCCAACTTAATTTGCAGAAACTGAGGCAGGAAAATGCTAGATTGA GAGAAGAGCATGAAAAAGTATCCAGCCTTCTTGCCAAGTATATTGGAAAACCAAAGTCACAGATTGATTTGTTGACGTCTGACACTGGATCTTCACAAGA AGAACTGCCAACATTTGTCCAGAATCAAAGGATGGGAAACCCTGGCATTGATTGGGGACGGAATCCAGGATCGGACATTAGTCATTTCGCATGTAGACTT GAAGGAATTCCAGATATGGAAAATGCACTCATGGCTGAGACTGCTGCCGGTGCAATGGATGAGTTGATCAGACTTTTGCGAGTAAATGAGCCTTTTTGGA TCAAGTCTCCATCTGACGGAAGACTCATCCTTGATCGGCTCAGTTATGAGAGAATTTACCCCAGGGCCGCTCATTTCATAAGTCGCAATGCTCGTGTCGA ATCCTCCAAGGATTCGGCAACAGTGACCATGCCTGGAATGGACTTGGTTGACATGTTTTTGGATCCTAATAAATGGGTGGATCTTTTTCCGACAATTGTT ACCGAAGCAAGAACAATTCAAGTACTTGAAGCTGGAACAGTAGGGAACCGTCATGGTTCGTTGCAGATGATGTATGAACAAATGCACATACTATCACCCT TGGTTCCGCCTAGGGAATTTTACTTCCTTCGCCTTTGTCTGCAACTTGAACCTGGGCAATGGGTGATAGCAGATGTATCTTATAACTACTTGAAAGAAAG CGGATCCCCTCCCTGCGCTTGGCGGCTTCCTTCTGGATGCATGATCCAAGACATGCCTAATGGATGTTCCAAGATAATATGGGTAGAACATGTGGAAGCG AATGATAGGATTCAAACTCACTGCCTGTACCGAGATCTCATATGTGGTAGTTATGCTTATGGGGCAGAAAGATGGATTGCTAGTCTCCAGAGGATTTGTG AGAGGCTCGCTTTCTCTACAGCTGTGCCTCCACGAGAACTCGGAGGAGTGGTCACTTCCCCTGAGGGTAGAAAGAGCATAGTAAACCTAGCCCACAGGAT GGTGAAGATTTTCTGTTCAAGTTTGGGTATGTCAGGAAAACTGGATTTCCGTCAATTGTCTGAAGGGAACAATAGTGGAGTTCGGGTGGCTATTTGTAAG AATGCAGAACAAGGCCAGCCGATTGGCACAGTTGCTAGTGCTGCTACTTCTTTTTGGCTTCCACTCTCACCTCAGAACGTGTTTAACTTCTTCAAAGCCG AGAAATCGCGAACTCAGTGGGATATTCTGTCGAATGGCAATCCTGTGCTTGAGATTTCACACATTTCTAATGGGGCTGATCCAGGGAACTGCATCTCCAT TATTCGACCTTTCATTCCTGCTGAGAACAACATGCTGATACTGCAAGAGAGCTGCACAGACTCCTCGGTATCAATGGTAGTATACGCTCCAGTAGGCATT CCAGCCATGAACGTGGCGATAAGCGGTGATGACTCATCAATCATTCCCATACTTCCATCAGGTTTTGTAATATCTGGCGACGGCCGTATGGACACAAGAG GGACCAGTTCTAGTTCCACCAGTTCTACTGGGTCAAACTCAGGAGGTTCACTCCTTACAATAGCCTTCCAAATTCTGGTCTCTGGCTCTAATTCCTCATC CTCCACAGAATTCAACATGGAATCTGTGGCAACAGTGAATACCCTCATCAGCACCACTGTTCTGAAAATTAAATCTGCTTTTAATTGCTCAGATTTGGAT TAA
AA sequence Show only first row Show all	>Potri.017G144601.2 pacid=42814195 polypeptide=Potri.017G144601.2.p locus=Potri.017G144601 ID=Potri.017G144601.2.v4.1 annot-version=v4.1 MKNVICPACGGHPFGEEERQLNLQKLRQENARLREEHEKVSSLLAKYIGKPKSQIDLLTSDTGSSQEELPTFVQNQRMGNPGIDWGRNPGSDISHFACRL EGIPDMENALMAETAAGAMDELIRLLRVNEPFWIKSPSDGRLILDRLSYERIYPRAAHFISRNARVESSKDSATVTMPGMDLVDMFLDPNKWVDLFPTIV TEARTIQVLEAGTVGNRHGSLQMMYEQMHILSPLVPPREFYFLRLCLQLEPGQWVIADVSYNYLKESGSPPCAWRLPSGCMIQDMPNGCSKIIWVEHVEA NDRIQTHCLYRDLICGSYAYGAERWIASLQRICERLAFSTAVPPRELGGVVTSPEGRKSIVNLAHRMVKIFCSSLGMSGKLDFRQLSEGNNSGVRVAICK NAEQGQPIGTVASAATSFWLPLSPQNVFNFFKAEKSRTQWDILSNGNPVLEISHISNGADPGNCISIIRPFIPAENNMLILQESCTDSSVSMVVYAPVGI PAMNVAISGDDSSIIPILPSGFVISGDGRMDTRGTSSSSTSSTGSNSGGSLLTIAFQILVSGSNSSSSTEFNMESVATVNTLISTTVLKIKSAFNCSDLD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.017G144601 [exp]	0	1
AT2G21180			unknown protein		Potri.009G129200 [exp]	35.91	0.5591
AT4G35870			early-responsive to dehydratio...		Potri.007G063700 [exp]	54.73	0.5864
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	106.48	0.5436
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.001G199000 [exp]	115.65	0.5305
AT2G36350			Protein kinase superfamily pro...		Potri.009G146700 [exp]	162.66	0.5124
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	172.87	0.5112
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.014G047600 [exp]	193.00	0.5106

Compare expression of checked genes

Potri.017G144601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.