Plant FIBer expression Database

Potri.017G144700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17310 782 / 0 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2)
AT3G03250 776 / 0 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G074400
[exp]
855 / 0 AT5G17310 759 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.013G070001
[exp]
382 / 1e-126 AT3G03250 375 / 9e-124 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Potri.004G074750
[exp]
241 / 7e-79 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.004G074602
[exp]
61 / 8e-12 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007370
[exp]
776 / 0 AT5G17310 785 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10020788
[exp]
770 / 0 AT5G17310 781 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10010957
[exp]
671 / 0 AT3G03250 676 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Lus10031365
[exp]
655 / 0 AT3G03250 662 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Lus10041971
[exp]
329 / 8e-106 AT5G17310 332 / 6e-107 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10031368
[exp]
51 / 4e-08 AT3G03250 49 / 3e-08 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01704 UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence
>Potri.017G144700.1 pacid=42813456 polypeptide=Potri.017G144700.1.p locus=Potri.017G144700 ID=Potri.017G144700.1.v4.1 annot-version=v4.1
ATGGCTACTGATACGGCCAAGATCTCTCAGCTCAAATCAGCTGTTGCTAATCTCAATCAAATCAGCGAGAGTGAGAAAACTGGATTCGTCAACCTCGTTT
CTCGCTATCTCAGTGGGGAAGCGCAGCAAGTTGAGTGGAGTAAGATTCAGACACCTACTGATGAAGTAGTGGTTCCTTATGATACCTTGGCGCCAACTCC
GGAGGATCCGGAGGAAACAAAGAAGCTTTTGGACAAGCTTGTCGTTTTGAAGCTTAATGGAGGTTTGGGGACTACAATGGGATGCACTGGTCCTAAGTCT
GTCATTGAAGTTCGTAATGGATTGACATTTCTTGACCTTATTGTCATCCAGATCGAGAATCTTAATAAGAAATATGGGTGCAGTGTTCCCTTGCTTCTAA
TGAACTCATTCAACACTCATGATGATACACAGAAGATTGTTGAGAAGTACTCGAACTCAAATATTGAGATTCACACTTTTAATCAGAGCCAATACCCTCG
TCTGGTTGTTGATGATTTTGTTCCATTGCCTTCCAAAGGACATACTGACAAGGACGGATGGTATCCTCCTGGACATGGTGATGTGTTCCCATCCCTAAAG
AACAGTGGCAAACTTGATGCTTTATTGTCGAAGGGTAAAGAGTATGTGTTTGTCGCCAACTCAGACAACCTCGGCGCTGTTGTTGATTTGAAAATCTTAA
ATCATCTGATCAGAAACAAGAATGAATACTGCATGGAGGTGACACCCAAAACCCTGGCTGATGTGAAGGGTGGTACTCTCATCTCTTATGAAGGGAAGGT
TCAGCTCCTGGAAATTGCTCAGGTCCCTGATCAGCATGTTAATGAGTTCAAGTCAATCGAGAAGTTCAAAATTTTCAATACAAACAACTTGTGGGTGAAC
TTGAAAGCAATTAAAAGGCTTGTGGAAGCAGATGCACTTGAGATGGAGATCATTCCAAACCCAAAGGAAGTGGATGGAGTCAAAGTACTTCAGCTAGAAA
CTGCAGCTGGAGCAGCAATTAAGTTTTTCGATCATGCAATTGGTATAAATGTACCTCGTTCTCGATTCCTTCCAGTGAAGGCAACTTCAGATCTGCTTCT
TGTTCAGTCTGATCTTTACACTTTAGTTGATGGTTTTGTCATCCGAAATCCAGCTCGAACAATTCCTGCAAATCCTTCTATTGATCTGGGACCAGAGTAT
AAGAAGGTTGCCAACTTCTTGAGCCGATTTAAATCGATCCCTAGCATTATTGAGCTTGATAGTCTAAAGGTGGCCGGTGATGTATGGTTTGGTGCTGGTA
TTACTCTCAAGGGGAAAGTGAGTATCGTGGCAAAATCTGGTGTGAAATTGGAAATACCAGATGGAGCTATTCTTCAAAACAAGGAAATCAATGGCCCGGA
GGACCTCTAA
AA sequence
>Potri.017G144700.1 pacid=42813456 polypeptide=Potri.017G144700.1.p locus=Potri.017G144700 ID=Potri.017G144700.1.v4.1 annot-version=v4.1
MATDTAKISQLKSAVANLNQISESEKTGFVNLVSRYLSGEAQQVEWSKIQTPTDEVVVPYDTLAPTPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKS
VIEVRNGLTFLDLIVIQIENLNKKYGCSVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRLVVDDFVPLPSKGHTDKDGWYPPGHGDVFPSLK
NSGKLDALLSKGKEYVFVANSDNLGAVVDLKILNHLIRNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVN
LKAIKRLVEADALEMEIIPNPKEVDGVKVLQLETAAGAAIKFFDHAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNPARTIPANPSIDLGPEY
KKVANFLSRFKSIPSIIELDSLKVAGDVWFGAGITLKGKVSIVAKSGVKLEIPDGAILQNKEINGPEDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17310 AtUGP2, UGP2 UDP-glucose pyrophosphorylase ... Potri.017G144700
[exp]
0 1
AT1G32930 Galactosyltransferase family p... Potri.001G450200
[exp]
2.00 0.9287
AT1G66150 TMK1 transmembrane kinase 1 (.1) Potri.017G134900
[exp]
2.82 0.9125 TMK1.1
AT2G35880 TPX2 (targeting protein for Xk... Potri.016G066600
[exp]
3.00 0.9384
AT3G54950 pPLAIIIbeta, PL... patatin-related phospholipase ... Potri.012G123900
[exp]
4.58 0.9024
AT1G76670 Nucleotide-sugar transporter f... Potri.002G000500
[exp]
7.41 0.9080
AT1G02180 ferredoxin-related (.1) Potri.006G220700
[exp]
8.83 0.9142
AT1G71780 unknown protein Potri.002G062300
[exp]
10.48 0.8976
AT1G51560 Pyridoxamine 5'-phosphate oxid... Potri.008G006400
[exp]
12.72 0.8751
AT5G13500 unknown protein Potri.003G195600
[exp]
13.96 0.8875
AT5G64030 S-adenosyl-L-methionine-depend... Potri.007G104000
[exp]
15.19 0.8723

Potri.017G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.