Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32230 671 / 0 PRORP1 proteinaceous RNase P 1 (.1) AT2G16650 418 / 1e-140 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 405 / 4e-135 PRORP3 proteinaceous RNase P 3 (.1) AT5G60430 76 / 8e-16 drug transmembrane transporters;antiporters (.1.2) AT1G63320 59 / 9e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 60 / 5e-09 GUN1 genomes uncoupled 1 (.1) AT4G26680 56 / 4e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G11690 56 / 5e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09680 55 / 9e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19890 54 / 2e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074100 [exp] 1021 / 0 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.006G160300 [exp] 426 / 3e-139 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.009G145200 [exp] 411 / 2e-137 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.004G185200 [exp] 405 / 3e-135 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.017G131600 [exp] 62 / 6e-10 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G105600 [exp] 62 / 9e-10 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 61 / 1e-09 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.004G102700 [exp] 55 / 1e-07 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 55 / 2e-07 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039049 [exp] 689 / 0 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 682 / 0 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10038817 [exp] 572 / 0 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10014928 [exp] 525 / 0 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 441 / 3e-145 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10019535 [exp] 397 / 4e-132 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10043379 [exp] 265 / 7e-84 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10010410 [exp] 62 / 1e-09 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023650 [exp] 61 / 3e-09 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10027916 [exp] 59 / 9e-09 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0280 [poplar] [flax] PIN PF16953 [poplar] [flax] PRORP Protein-only RNase P
Representative CDS sequence Show only first row Show all	>Potri.017G144900.1 pacid=42814405 polypeptide=Potri.017G144900.1.p locus=Potri.017G144900 ID=Potri.017G144900.1.v4.1 annot-version=v4.1 ATGCTGCTCTGTAGAAGAAGCACTATTTTTGTTCCTTCTTTTATTGCAAAAACCTCACCAAATCTTTTTTCTTACTTTACTAAGAAAACCCATGCTCTTT CATTGTTTAAGAACAGCCCAATTCATTGTAATCACAGTTATTTATTTGGAAAACCCATAAAAGATTCAAACTTTATTGGTGCACATGATTTGTTTGTGAA TAAAAAAGCTAAATTTTGCAACTTGGCAATCTCCGGGACATCACGGAGAAATGAGAAAGCTGTTGGTGGTAATGTAATGTCTTTAAGGGAGAAAAAGAAA GCACGACGAGAGGCACCAGAGGGAGTGCTTAAGTTTAAGCTAGATACGTGTTCAAAGCGTGGTGATGTTGTTGAAGGGCTTAGGTTGTATGATGAGGCGA GGAAAAATGGGGTTGAGCTTAATCAACACCATTATAATGTGTTGCTTTATCTGTGCTCTCAAAATGGAGGTGAAAATGTAAGTGATTTGAGAAAACAGGG TTTCGAGATATTTCAGCAGATGATTATCGATAAAGTTCCTCCCAATGAGGCTACGTTTACAAATGCAGCAAGGTTGGCTTCTGCAATGGAAGATCCAGAA ATGGCTTTTGATTTGGTTAAGCAAATGAAGGGTTTTGGTATTCTGCCGAAGTTGAGGTCTTATGGTCCGCCGTTGTTTGGGTTTTGTAAGAAAGGGATGG CTGATAAAGCTTATGAAGTTGATGCACATATGATTGAATATGGGGTTGTGGCTGAAGAGCCTGAGCTTTCTGCTCTTCTGAAAGTTAGTGCTGATGTAAA CAATGCTGACAAGGTGTATGAGTTGCTGCATCGGTTGCGAACCTCTGTAAGGCAGGCCACAGAGTCAACTGTAGGGATTATTGAAGATTGGTTTAAGTCC AAACATGCTGCAAAAACTGGAAAGGAGAATTGGGATGTGAGAAAGGTGAAGGAAGGAGTTGCGAGAGGAGGAGGAGGTTGGCATGGACAAGGGTGGTTAG GATGTGGGCAGTGGAGAGTGGTCAGGACTCAAATGGACAAGGAGGGTGTTTGTGGTTCTTGTGGTGAGAGGCTTGCTTGTATTGATATTGATCCAAGAGA GACGGAGGACTTTGCTATCTCATTATCTAAGTTGGCTTTGGGAAGAGAGGTTAAGGCTGATTTTATTCGGTTCCAGGATTGGCTTCAGCGGCATGGTCCA TTTGATGCAGTTGTAGATGGAGCTAATTTGAGTCTTATCAATCAACAGACTTTCAGCTTCTCCCAGCTTAATTCTGTTGTACATCGATTACACGACATGA GTCCATCCAAGAAATTGCCACTCGTTATTTTGCATAAAAGTCGTGTAACTGGGGGTCCAGCTCAGAGTCCTTATAACAAGAAGTTGTTAGAGAGGTGGAA AAATTCTGGTGCTCTTTATGTTACTCCGGCTGGTTCCAATGATGATTGGTACTGGTTATATGCTGCTGTTTGCTATAAGTGTTTGTTGGTGACAAATGAT GAAATGAGGGACCACTTGTTCCAGTTGCTAGGGACTTCCTTTTTTCCAAGATGGAAGGAAAAGCATCAGGTTCGACTCTCAGTATCGCGATCTGGAATTG CTTTGCAGATGCCTCCCCCTTACTCAATTGTTATTCAGGAGTCAGAAAATGGTAGTTGGCATGTTCCGACAACCACAAATGATGATCTTGAGACCCCAAG GCAGTGGTTATGTGCCACCCGACCCATCAAATCATGA
AA sequence Show only first row Show all	>Potri.017G144900.1 pacid=42814405 polypeptide=Potri.017G144900.1.p locus=Potri.017G144900 ID=Potri.017G144900.1.v4.1 annot-version=v4.1 MLLCRRSTIFVPSFIAKTSPNLFSYFTKKTHALSLFKNSPIHCNHSYLFGKPIKDSNFIGAHDLFVNKKAKFCNLAISGTSRRNEKAVGGNVMSLREKKK ARREAPEGVLKFKLDTCSKRGDVVEGLRLYDEARKNGVELNQHHYNVLLYLCSQNGGENVSDLRKQGFEIFQQMIIDKVPPNEATFTNAARLASAMEDPE MAFDLVKQMKGFGILPKLRSYGPPLFGFCKKGMADKAYEVDAHMIEYGVVAEEPELSALLKVSADVNNADKVYELLHRLRTSVRQATESTVGIIEDWFKS KHAAKTGKENWDVRKVKEGVARGGGGWHGQGWLGCGQWRVVRTQMDKEGVCGSCGERLACIDIDPRETEDFAISLSKLALGREVKADFIRFQDWLQRHGP FDAVVDGANLSLINQQTFSFSQLNSVVHRLHDMSPSKKLPLVILHKSRVTGGPAQSPYNKKLLERWKNSGALYVTPAGSNDDWYWLYAAVCYKCLLVTND EMRDHLFQLLGTSFFPRWKEKHQVRLSVSRSGIALQMPPPYSIVIQESENGSWHVPTTTNDDLETPRQWLCATRPIKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.017G144900 [exp]	0	1
					Potri.003G046300 [exp]	3.31	0.7990
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Potri.003G211000 [exp]	4.35	0.7898
					Potri.011G126600 [exp]	5.29	0.7967
AT1G74630			Tetratricopeptide repeat (TPR)...		Potri.005G035900 [exp]	13.63	0.8035
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Potri.009G005900 [exp]	20.12	0.7678
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	20.39	0.7946
AT5G60390			GTP binding Elongation factor ...		Potri.008G043100 [exp]	20.59	0.8182	ADR12.3
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	25.98	0.8106
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	26.45	0.7553
AT1G10417			unknown protein		Potri.008G190600 [exp]	26.90	0.8095

Compare expression of checked genes

Potri.017G144900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.