Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 225 / 1e-66 unknown protein AT3G50150 185 / 5e-53 Plant protein of unknown function (DUF247) (.1) AT3G50120 185 / 8e-53 Plant protein of unknown function (DUF247) (.1) AT3G50170 183 / 7e-52 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT2G36430 175 / 8e-50 Plant protein of unknown function (DUF247) (.1) AT3G50160 173 / 2e-48 Plant protein of unknown function (DUF247) (.1) AT3G50140 169 / 8e-47 Plant protein of unknown function (DUF247) (.1) AT3G47250 164 / 1e-45 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50180 166 / 2e-45 Plant protein of unknown function (DUF247) (.1) AT5G11290 160 / 4e-45 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108400 [exp] 352 / 2e-118 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 352 / 2e-117 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 336 / 7e-112 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 297 / 1e-96 AT4G31980 236 / 1e-70 unknown protein Potri.013G146300 [exp] 289 / 1e-93 AT4G31980 217 / 1e-63 unknown protein Potri.018G029800 [exp] 224 / 9e-69 AT4G31980 317 / 1e-101 unknown protein Potri.003G181800 [exp] 211 / 1e-63 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 205 / 2e-61 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 206 / 3e-61 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 352 / 7e-118 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 333 / 1e-110 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 274 / 3e-87 AT4G31980 251 / 5e-76 unknown protein Lus10010064 [exp] 265 / 6e-84 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 263 / 4e-83 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 259 / 9e-82 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 250 / 5e-78 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 203 / 2e-60 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 202 / 1e-59 AT4G31980 180 / 2e-49 unknown protein Lus10027720 [exp] 181 / 2e-51 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.017G145100.1 pacid=42814018 polypeptide=Potri.017G145100.1.p locus=Potri.017G145100 ID=Potri.017G145100.1.v4.1 annot-version=v4.1 ATGGCCAAAGATATAGCTCAAGGTGCAGATGGTGGTGCTTGGCTGGAGAGCATAAAGCTAGACATTGCAAATTTGCAATCAACATCCACTCGTTATACCA TCTGTAAGGTACCATACAAGCTTCGGAATGAGAAAAATGATGCTTACAGTCCTCAAACCATCTCAATCGGACCTCTTCACAATCCAAAGGACAAGCCGAA GGAGAATCTGAAGGCTATGCAGGAACATAAATTGTCCTACATGCTATCCCTGCTTGAACGAACACGCAACGAAACAGATGCTTTAGAAGCTTGTGGTAAA GCTACTTTAGATTTGGATGCAAAAGTTCGTCTTAACTATGAAGAAAAAGTTGAACACTCAGGAACTGAACTTGCCAGAATGTTGTTAGTTGATGGTTGCT TTATACTAGAGCTTTTCATAAGATATTATATCAATGACCTCAGACCTGATGATCCCATACTTCTTAATCCTCGGATGATCTCAGTTGTCCGGCGTGATTT GGCACTGCTAGAGAACCAGATTCCGTTCATTGTTCTCGAGGAGTTATTTAAGGTAATACAAGACCATAGTGATATTACTCTACCAGAATTAAATGATCTT GCTATTTCTTTTTTCAAACTAGATCGGTCGAGAAAGGGAAGCAAAAGTTGTCATTTGCTTGATCTAATACACAATTGTTACTCACCGGATTCTGCAAGTA AACATGCAACAGCCAAAGGAGAATGGAAAGTAATGCAATGTGCGACAAAACTCAGTTACAATGGAATTAAGTTTGCTAGATCTGACATTGAAAACAATCA CAAGAAAAAGGGAATTGAGGTTGGAAATGGTAGTAAAAAAGATCTATTTGATTTGAAGTTTGAAAAGGGTACTATGAAAATCCGACAATTGTGTGTTGAG AATTCACTCTTCCAAAACCTCATTGCCATGGAGCAATGCTTGCATGGCCGAGAACATTTCATGACATCTTATGGGTTACTCATGGATTTTCTTGTTGACT CATCTAAAGACGTCGAGTTTCTTGTGAACAAGGGCATAATTCCACACAATTTTGGTGATTATGAAGAAGTTGCACATCTCTTTAACAATATCGGTAAGCA GGTTGTCGTGCGAGACTTTTATTTTGCAGGAACATCCGAGGAGGTGGTTAACTACTGCAAAACGAGCTGGTGGCTCAGATATGTGCAATCCTTGCTACGT GACTATCTTGCCAATCCCTGGATGGCTACATCAGTCGTTGCTGCCATTATCCTTCTAGTAGCTACTTTAATACAAACCATCTACTCTGTACTTTCTTATT ATCATGATCCTGCACCTGTTATTAATGGCTAG
AA sequence Show only first row Show all	>Potri.017G145100.1 pacid=42814018 polypeptide=Potri.017G145100.1.p locus=Potri.017G145100 ID=Potri.017G145100.1.v4.1 annot-version=v4.1 MAKDIAQGADGGAWLESIKLDIANLQSTSTRYTICKVPYKLRNEKNDAYSPQTISIGPLHNPKDKPKENLKAMQEHKLSYMLSLLERTRNETDALEACGK ATLDLDAKVRLNYEEKVEHSGTELARMLLVDGCFILELFIRYYINDLRPDDPILLNPRMISVVRRDLALLENQIPFIVLEELFKVIQDHSDITLPELNDL AISFFKLDRSRKGSKSCHLLDLIHNCYSPDSASKHATAKGEWKVMQCATKLSYNGIKFARSDIENNHKKKGIEVGNGSKKDLFDLKFEKGTMKIRQLCVE NSLFQNLIAMEQCLHGREHFMTSYGLLMDFLVDSSKDVEFLVNKGIIPHNFGDYEEVAHLFNNIGKQVVVRDFYFAGTSEEVVNYCKTSWWLRYVQSLLR DYLANPWMATSVVAAIILLVATLIQTIYSVLSYYHDPAPVING

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.017G145100 [exp]	0	1
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Potri.015G064200 [exp]	1.00	0.8220	FIS1.3
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.018G016600 [exp]	6.63	0.8134
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	11.40	0.8163
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	17.86	0.7885
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	18.33	0.8163
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.017G060100 [exp]	19.49	0.7740
AT1G50180			NB-ARC domain-containing disea...		Potri.005G009201 [exp]	26.07	0.7540
AT2G39450		ATMTP11	Cation efflux family protein (...		Potri.008G049600 [exp]	31.46	0.7595	PtrMTP11.2
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009450 [exp]	32.46	0.7329
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	34.07	0.7899	Pt-PHOT1.1

Compare expression of checked genes

Potri.017G145100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.