Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 793 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 758 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 734 / 0 EFR EF-TU receptor (.1) AT3G47580 732 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 727 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 444 / 1e-139 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 427 / 1e-131 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 422 / 4e-129 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 414 / 4e-126 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 404 / 4e-124 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G151400 [exp] 1657 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 1598 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G069001 [exp] 1317 / 0 AT3G47570 676 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 1216 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 1213 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1181 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1158 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 1145 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033900 [exp] 1120 / 0 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 878 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 857 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 855 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 855 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 853 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 849 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 848 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 847 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 844 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 843 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G145200.1 pacid=42814239 polypeptide=Potri.017G145200.1.p locus=Potri.017G145200 ID=Potri.017G145200.1.v4.1 annot-version=v4.1 ATGAGTTCATGCATTTTGTGGTTTCTTTTCTTGCAAGTAATTCACCACTCTTTCTCCATCTCATTTGCTAGAGGAGAAAGCGAGATAGACAAGCTCTCGC TACTAGCTTTTAAGGCTCAAATCTCAGACCCCCCTGAAAAACTAAGCTCGTGGAATGAATCCTTGCCCTTCTGCCAGTGGTCAGGAGTAACATGTGGAAG ACGGCATCAAAGAGTCATAGAGCTTGACCTCCACTCCAGCCAACTGGTGGGCAGCCTATCTCCCCACATTGGGAACTTGAGTTTTCTTAGGCTGCTAAGA TTGGAGAACAACAGTTTCACCAATACTATCCCCCAAGAAATAGATCGTTTGGTTCGGCTACAGACACTGATTCTCGGGAACAACTCGTTCACCGGTGAAA TCCCGGCTAACATTTCTCATTGCTCGAACCTCCTGAGCCTTAATTTAGAGGGAAACAATCTTACTGGCAACCTTCCTGCAGGACTTGGATCGTTATCAAA GCTGCAGGTATTTAGTTTTAGAAAAAACAATCTAGGAGGCAAGATACCCCCCTCTTTCGAAAATCTTTCATCTATCATTGAAATTGACGGAACACTTAAT AATTTACAAGGGGGTATTCCCAGTAGTATTGGGAAACTGAAAACATTAAGCTTCTTTTCACTTGGCTCAAATAATCTGAGTGGTACAATCCCTCTCTCCC TATACAATATTTCCTCTCTCCTTCATTTATCTTTGGCTCATAACCAATTTCATGGTACACTTCCTCCAAATATGGGCCTAACTCTTCCAAATCTCCAATA TCTTGGCATTCACGACAATCGATTAAGCGGGCTAATTCCAGCAACGCTCATAAATGCCACAAAATTTACTGGTATTTATCTTTCATACAATGAATTCACT GGAAAAGTTCCCACTTTAGCAAGCATGCCTAACCTAAGGGTTCTTTCAATGCAAGCAATTGGGCTTGGAAATGGTGAGGATGATGATTTGTCCTTTCTCT ACACCCTCTCAAACAGCAGCAAGTTGGAAGCTTTGGCTATAAATGAGAACAATTTTGGAGGGGTGCTGCCTGATATAATTAGCAACTTCTCAACAAAGCT CAAGCAGATGACATTCGGAAGCAATCAAATCCGAGGAAGCATTCCCGATGGCATTGGAAATCTCGTAAGCTTGGATACTTTGGGTTTAGAGGCAAATCAC TTGACTGGCAGTATACCAAGTTCTATTGGTAAATTACAAAATTTAGCTGATTTCTTTCTTAATGAAAACAAATTATCAGGGAGCATCCCTTCTTCTTTAG GGAACATCACCTCGTTGATGCAAATTAATTTTGATCAAAATAATCTACAGGGAAGCATCCCTCCAAGCCTTGGAAACTGCCAGAACTTGTTGGTCTTGGC TCTCTCCCAAAACAATCTTAGTGGTCCCATACCAAAAGAGGTCCTTAGCATTTCATCCTTGTCAATGTATTTGGTCCTGTCTGAAAATCAGTTGACTGGT TCCCTTCCCTTTGAAGTTGGCAAGTTAGTGACTCTTGGATACATGGACATCTCCAAAAACAGGCTATCAGGGGAAATTCCCGCAAGTCTTGGCAGTTGCG AGAGTTTGGAACATTTGTATTTGGATGGAAACTTCTTACAAGGCCCCATTTCTGAGTCTTTGAGATCTTTGAGGGCACTTCAAGATCTTAATCTCTCTCA CAACAACTTGTCTGGCCAAATTCCCAAGTTTTTGGGAGATCTGAAGTTGCAGAGTTTGGACCTGTCATTTAATGACCTTGAAGGTGAGGTGCCCATGAAC GGTGTTTTTGAGAACACCAGTGCGATTTCAATTTCAGGGAACAAGAATCTTTGTGGAGGAATTCTTCAGTTGAATCTGCCCAAATGCAGATCCAAGTCAA CAAAGCCAAAATCCTCTACCAAGCTGGCATTGATAGTCGCAATTCCTTGTGGCTTTATTGGATTAATCTTCATCACATCTTTTTTATATTTTTGCTGCTT GAAAAAATCATTGAGAAAAACAAAAAATGATTTGGCACGTGAAATCCCATTCCAAGGAGTAGCCTACAAAGACCTCCGTCAAGCAACTAATGGATTCTCT TCTGAAAATTTAATTGGTGCTGGTAGTTTTGGGTCTGTGTATAAAGGATTACTAGCCTCTGATGGAGTGATTGTTGCTGTGAAAGTATTCAACTTGCTAC GCGAAGGAGCTTCCAAAAGCTTCATGAGAGAATGTGCAGCCTTGACAAACATCAGGCACCGAAATCTTGTCAAAGTATTATGTGCATATGCTGGCGTTGA CGTTCAAGGTAAAGATTTCAAAGCTCTTGTTTATGAGTTCATGATCAATGGAAGTCTAGAAGAATGGTTGCATCCAAACCAAACATTGTATCAGGAAGTG CATGAGCCAAGAAATCTTAATCTCATTCAGAGGTTAAACATTGCAATTGATGTGGCTAATGCGCTCGACTATTTGCACAACCATTGCAAAACGCCTATTG CTCATTGTGATCTTAAGCCTAGTAATGTTCTTCTCGATGGAGATATGACTGCTCATGTTGGGGACTTTGGATTGTTAAAGTTCCTTTCTGAAGCATCCTG TCAGACAAGCTCTGTTGGATTAAAAGGCACCGTTGGCTACGCAGCTCCAGAGTATGGCATCGGAAGCGAGGTGTCAACTTTGGGGGATGTGTACAGCTAT GGCATCCTACTGCTGGAGATGATTACTGGAAAGAGACCTACAGATAGCATGTTTAAAGATGGAATAGAACTTCACAATTATGTTAAAATGGCATTACCTG ACCGTGTAGTTGATGTTGCGGATCCGAAACTTGTGATAGAAGTTGATCAGGGAAAAGACGCTCATCAAATCCTGGAGTGTTTGATATCAATTAGCAAGGT AGGAGTGTTTTGTTCAGAAAAGTTTCCAAGAGAGAGAATGGGCATCAGCAATGTTGTAGCTGTATTGAATCGAACTAAGGCCAATTTTCTCGAAGGCATG GACAGCTACCCTCCTAGAAGTTCCAGCTTGCCCTACGGGGTCCAGACGACTTCGAAGTGA
AA sequence Show only first row Show all	>Potri.017G145200.1 pacid=42814239 polypeptide=Potri.017G145200.1.p locus=Potri.017G145200 ID=Potri.017G145200.1.v4.1 annot-version=v4.1 MSSCILWFLFLQVIHHSFSISFARGESEIDKLSLLAFKAQISDPPEKLSSWNESLPFCQWSGVTCGRRHQRVIELDLHSSQLVGSLSPHIGNLSFLRLLR LENNSFTNTIPQEIDRLVRLQTLILGNNSFTGEIPANISHCSNLLSLNLEGNNLTGNLPAGLGSLSKLQVFSFRKNNLGGKIPPSFENLSSIIEIDGTLN NLQGGIPSSIGKLKTLSFFSLGSNNLSGTIPLSLYNISSLLHLSLAHNQFHGTLPPNMGLTLPNLQYLGIHDNRLSGLIPATLINATKFTGIYLSYNEFT GKVPTLASMPNLRVLSMQAIGLGNGEDDDLSFLYTLSNSSKLEALAINENNFGGVLPDIISNFSTKLKQMTFGSNQIRGSIPDGIGNLVSLDTLGLEANH LTGSIPSSIGKLQNLADFFLNENKLSGSIPSSLGNITSLMQINFDQNNLQGSIPPSLGNCQNLLVLALSQNNLSGPIPKEVLSISSLSMYLVLSENQLTG SLPFEVGKLVTLGYMDISKNRLSGEIPASLGSCESLEHLYLDGNFLQGPISESLRSLRALQDLNLSHNNLSGQIPKFLGDLKLQSLDLSFNDLEGEVPMN GVFENTSAISISGNKNLCGGILQLNLPKCRSKSTKPKSSTKLALIVAIPCGFIGLIFITSFLYFCCLKKSLRKTKNDLAREIPFQGVAYKDLRQATNGFS SENLIGAGSFGSVYKGLLASDGVIVAVKVFNLLREGASKSFMRECAALTNIRHRNLVKVLCAYAGVDVQGKDFKALVYEFMINGSLEEWLHPNQTLYQEV HEPRNLNLIQRLNIAIDVANALDYLHNHCKTPIAHCDLKPSNVLLDGDMTAHVGDFGLLKFLSEASCQTSSVGLKGTVGYAAPEYGIGSEVSTLGDVYSY GILLLEMITGKRPTDSMFKDGIELHNYVKMALPDRVVDVADPKLVIEVDQGKDAHQILECLISISKVGVFCSEKFPRERMGISNVVAVLNRTKANFLEGM DSYPPRSSSLPYGVQTTSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	1.00	0.9866
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	2.44	0.9746
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.013G075600 [exp]	4.00	0.9565
					Potri.004G140000 [exp]	5.91	0.9436
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	6.92	0.9414
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	8.36	0.9389
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Potri.009G010700 [exp]	10.19	0.9336	CNGC15.1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.001G060100 [exp]	10.86	0.8770
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	11.48	0.9350
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.002G256300 [exp]	11.61	0.9298	Pt-SDD1.1

Compare expression of checked genes

Potri.017G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.