Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37900 164 / 1e-43 Major facilitator superfamily protein (.1) AT3G53960 161 / 2e-42 Major facilitator superfamily protein (.1) AT3G54450 147 / 5e-38 Major facilitator superfamily protein (.1) AT5G01180 129 / 9e-32 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G47960 127 / 7e-31 Major facilitator superfamily protein (.1) AT1G69870 124 / 1e-29 NRT1.7 nitrate transporter 1.7 (.1) AT1G18880 120 / 1e-28 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G62680 120 / 1e-28 Major facilitator superfamily protein (.1) AT5G14940 120 / 2e-28 Major facilitator superfamily protein (.1) AT3G54140 119 / 3e-28 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G145532 [exp] 741 / 0 AT2G37900 130 / 2e-32 Major facilitator superfamily protein (.1) Potri.017G145550 [exp] 268 / 3e-87 AT1G72125 45 / 1e-05 Major facilitator superfamily protein (.1) Potri.006G092000 [exp] 158 / 2e-41 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103500 [exp] 155 / 2e-40 AT2G37900 776 / 0.0 Major facilitator superfamily protein (.1) Potri.008G061100 [exp] 149 / 2e-38 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1) Potri.019G055800 [exp] 135 / 2e-33 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 129 / 2e-31 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 128 / 4e-31 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 126 / 1e-30 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024340 [exp] 156 / 1e-40 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 142 / 5e-36 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 137 / 3e-34 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 128 / 3e-31 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 125 / 3e-30 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 124 / 6e-30 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10024300 [exp] 123 / 2e-29 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10032252 [exp] 122 / 3e-29 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10006125 [exp] 122 / 3e-29 AT3G54140 526 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10015351 [exp] 120 / 2e-28 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.017G145500.1 pacid=42813142 polypeptide=Potri.017G145500.1.p locus=Potri.017G145500 ID=Potri.017G145500.1.v4.1 annot-version=v4.1 ATGGCTACTTCTGTACAAAGGAACCTTATATCACTTATTATCAACTTTCAACTGGTGCGTCCGTCATGGTTTCTCAGCGCCCTCTGTAGAGTAACTGGCT GGGTCAAACTTCATGTCTATTTTACGAAGGCCGTCTTCTTCATCCTTGGTTTGATTTATAGCCACAGCTTCGTAAACAATGCTGTGGTGTTTCTGTGGAT GGATTACTTAATTGATGTGGGGAAATTACCGCTTCCACTAGCTACTATTGCTGTGAATGTTCAAGAAGGTTTATATGTCATTTGCACTTTTCTCATTGCT AACATAGCCGATGCCTACACAGGACCTTATAAAGCAATAGTTTTCAGCACTGCTTCATATGCATTCGGACTGTTGCTATGGTTTCTTGCTAACCGGTTCT GGGGCAATTCATCCTCCACCGTGATTATACTACTTTATCTGATGATGGTACTAGCAACTGTGGGCAAGGCAAGTCAGGATCCTTGTTTAAAAGCATTTCT ACGTGATCAATTAGTCGAGCATAAACCTAACCTTAACGCAGATAAGGACCAAGCTGACGAGGTTCCCAGTAAACCAGACAAAGCTAAGGTTCGAAGAAAA TTTTGGTGGCGTATTGCTTCTACGGTGGGCACTGTGTCGTCTGTGATAATGGCCGGAGTTTCTAATCAGAGAATGATCGCCGTAATTTCATTTTCGGTTA TGGCATTGGCTTGTTTAACCTTTGCGTTAGGAAAAAGCTTTTACTACCCCGACAAACCAACTGGAATCCCTCTTATCGTTATTTATAGAGTACTTAAGGC AGCTTTTGTGAAGCGTCACCTGCAACACGCTCGTGAACCCAATGACTACTACATGAATGATAGTGGTGGATTGCATCTATTGCCCAACTTTCGAATCATC AGGTGGCTGGACAAAGCTGCTCTTTTAGAGACATCCAAGTCCCTCTCAGCTGAAGAACAGGAGAAAAACAGGAGACTTTTCTCAGTCCAAGATGTGCAAC AAGTAAAGCAACTTCTTGCAATGGTTCCTATGTGGACAGCACTCCCCATCCACGGCCTCGTTCTGGCAACGGGTTCGACTTTCTTCGTTGTGCAAAGTGA AAGCCTCTATTCTGATCCTGTTTTTTCTATAAATGTTCTGTTTCTACTTCAGGGTTTCGTAACAGTTATAGTTCCATACGTCCATGACATTTTAGTATCC GGATGGATTAAAAAACTTCCGATGCATCATGGTAGAACGGTATGGATTCAAAAACTTCTGAAGCATCGTGTTGGACTCGTGAGAATCGCAATTGGGATTG CGTGCTCTATAATCTGTTGCATGGTATCAATGCTGGTTGAGACTCGTAGATTGAATCTTATTAAAACACGTGGAGATGCTGAACCATTTCCAATGAGCAC AGTATGGCTGGTTCCACAGTTTTTCCTGATAGGACTCGTAGAAGGACTGGTTGCTGATGGCTTAGCTGATTTTTATAATGTCCATGTAGATGAGTCTTTG AAACATTATGAATCGCCATTCAACGAGTCTGCAATTGGCGTTGGGAAGTTCCTGAGTGCGGCACTTGTTCTTACTTTGTCAGGCAGCTGGTTTCATCACA CTCTGAATACAAGTCATCTGGACAAATATTACATGCTGTTAGGTATTCTAAGTTCTGTGAACCTATGCTTTTATCTGCTTGTCATGTACGCCTACGCATG GAAAGCTCAAGTGAATGGCTCCCCTGACCCTGAAGTCTCGACTTAG
AA sequence Show only first row Show all	>Potri.017G145500.1 pacid=42813142 polypeptide=Potri.017G145500.1.p locus=Potri.017G145500 ID=Potri.017G145500.1.v4.1 annot-version=v4.1 MATSVQRNLISLIINFQLVRPSWFLSALCRVTGWVKLHVYFTKAVFFILGLIYSHSFVNNAVVFLWMDYLIDVGKLPLPLATIAVNVQEGLYVICTFLIA NIADAYTGPYKAIVFSTASYAFGLLLWFLANRFWGNSSSTVIILLYLMMVLATVGKASQDPCLKAFLRDQLVEHKPNLNADKDQADEVPSKPDKAKVRRK FWWRIASTVGTVSSVIMAGVSNQRMIAVISFSVMALACLTFALGKSFYYPDKPTGIPLIVIYRVLKAAFVKRHLQHAREPNDYYMNDSGGLHLLPNFRII RWLDKAALLETSKSLSAEEQEKNRRLFSVQDVQQVKQLLAMVPMWTALPIHGLVLATGSTFFVVQSESLYSDPVFSINVLFLLQGFVTVIVPYVHDILVS GWIKKLPMHHGRTVWIQKLLKHRVGLVRIAIGIACSIICCMVSMLVETRRLNLIKTRGDAEPFPMSTVWLVPQFFLIGLVEGLVADGLADFYNVHVDESL KHYESPFNESAIGVGKFLSAALVLTLSGSWFHHTLNTSHLDKYYMLLGILSSVNLCFYLLVMYAYAWKAQVNGSPDPEVST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37900			Major facilitator superfamily ...		Potri.017G145500 [exp]	0	1
AT2G37900			Major facilitator superfamily ...		Potri.017G145532 [exp]	1.00	0.9742
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.001G063700 [exp]	3.46	0.9272
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.009G143300 [exp]	4.00	0.8797
					Potri.019G105600 [exp]	6.24	0.9197
AT2G44930			Plant protein of unknown funct...		Potri.012G035100 [exp]	10.09	0.9013
					Potri.019G108700 [exp]	10.95	0.8829
					Potri.008G204750 [exp]	12.00	0.8629
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G052700 [exp]	12.48	0.8475
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037500 [exp]	13.41	0.8777
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145522 [exp]	13.41	0.8939

Compare expression of checked genes

Potri.017G145500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.