Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37900 129 / 2e-32 Major facilitator superfamily protein (.1) AT3G53960 119 / 1e-28 Major facilitator superfamily protein (.1) AT3G54450 116 / 9e-28 Major facilitator superfamily protein (.1) AT5G01180 108 / 4e-25 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G47960 108 / 4e-25 Major facilitator superfamily protein (.1) AT5G62680 100 / 2e-22 Major facilitator superfamily protein (.1) AT3G54140 99 / 5e-22 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G26690 99 / 8e-22 Major facilitator superfamily protein (.1) AT3G45720 98 / 1e-21 Major facilitator superfamily protein (.1) AT3G45710 96 / 3e-21 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G145500 [exp] 715 / 0 AT2G37900 164 / 1e-43 Major facilitator superfamily protein (.1) Potri.006G092000 [exp] 126 / 3e-31 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103500 [exp] 123 / 4e-30 AT2G37900 776 / 0.0 Major facilitator superfamily protein (.1) Potri.008G061100 [exp] 119 / 7e-29 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1) Potri.006G096800 [exp] 108 / 5e-25 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.019G079600 [exp] 105 / 3e-24 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 103 / 1e-23 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.019G055800 [exp] 103 / 2e-23 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.008G170100 [exp] 103 / 2e-23 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024340 [exp] 129 / 4e-32 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10008232 [exp] 120 / 7e-29 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 115 / 2e-27 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10039521 [exp] 111 / 5e-26 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10011786 [exp] 110 / 9e-26 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 107 / 1e-24 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10012663 [exp] 106 / 1e-24 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 105 / 5e-24 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10032252 [exp] 105 / 6e-24 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10009462 [exp] 103 / 1e-23 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.017G145532.1 pacid=42813392 polypeptide=Potri.017G145532.1.p locus=Potri.017G145532 ID=Potri.017G145532.1.v4.1 annot-version=v4.1 ATGCCCACCGTTGCCTCCACTTTATGTCCTCCACCATGTGCCAAGTGGGAGATTAGGTATTCCCACTTGCATATGGTGGGACATTGTTTGTCTCCACTAA CTAACAATCAATTAGTCAAGCATAAACCTAACCTTAACGCAGATAACGACCAAGCTGACGAGGTTCCAAGTAAACTAGACATCAGGATAGATTATAAAAA AGCTGAGGTTCGAAGAAAATTTTGGTGGCGTATTGCTTCTACGGTGGACACTGTCTCGTCTGTGATAATGGCCGGAGTTTCTGATCAGAGAAAGATGACT TCTGCATTTTCATTTTCGGTTATGGCATTGGCTTGTTTAACCTTTGCGTTAGGAAAAAGCTTTTACTACGCCGACAAACCAACTGGAAGCCCCCTTATCG TTATTTATAGAGTTCTTAAGGCAGCTTTTGTGAAGCGTCACCTGCAACACGCTCGTGAACCCAATGACTACTACATGAATGATAGTGGTGGATTGCTTCT GTTGCCCGACATTCGAATCATCAGGTTGCTGGACAAAGCTGCTCTTCTAGAGACATCCAAGTCCCTCTCAGCTGAAGAACAGGAGCAAAACGGGAGACTT CTCCCAGTCCGAGATGTGCAACGAGTAAAGCAACTTCTTGCATTGCTTCCTATGTGGACAGCACTCCCCATCCACGGCCTCGTTCTGGCAACGGGTTCAA CTTTCTTCGTTGTGCAAAGTGAAAGCCTCTATTCTGATCCTGTTTTGTCTATAAATGTTCTGTTTCTACTTCAGGGTTTCGTAACAGTTATAGTTCCATA CGTCCATGACTTTTTAGTATCCGGATGGATTAAAAAACTTCCGATGCATCATGTTAGACCGATATGGATTCAAAAACTTCTGAAGCATCGTGTTGGACTC GTGAGAATCGCAATTGGGATAGCGTGCTCTATAATCTGTTGCATGGTATCAATGCTGGTTGAGACTCGTAGATTGAATCTTATTAAAACACGTGGAGATG CTGAACCATTTCCAATGAGCACAGTATGGCTGGTTCCACAGTTTTTCCTGATAGGACTCGTAGAAGGACTGGTTGCTGATGGCTTAGCTGATTTTTATAA TGTCCATGTAGATGAGTCTTTGGAACATTATGAATCGCCATTCAACGAGTCTGCAATTGGCGTTGGGAAGTTCCTGAGTGCGGCACTTGTTCTTACTTTG TCAGGCAGCTGGTTTCATGACACTCTGAATACAAGTCATCTGGACAAATATTACATGCTGTTAGGTATTCTAAGTTCTGTGAACCTATGTTTCTATCTGC TTGTCATGTACGCCTACGCATGGAAAGCCCTTCAAGTGAATGGCTCCCCTGACCCTGAAGTCTCGACTTAG
AA sequence Show only first row Show all	>Potri.017G145532.1 pacid=42813392 polypeptide=Potri.017G145532.1.p locus=Potri.017G145532 ID=Potri.017G145532.1.v4.1 annot-version=v4.1 MPTVASTLCPPPCAKWEIRYSHLHMVGHCLSPLTNNQLVKHKPNLNADNDQADEVPSKLDIRIDYKKAEVRRKFWWRIASTVDTVSSVIMAGVSDQRKMT SAFSFSVMALACLTFALGKSFYYADKPTGSPLIVIYRVLKAAFVKRHLQHAREPNDYYMNDSGGLLLLPDIRIIRLLDKAALLETSKSLSAEEQEQNGRL LPVRDVQRVKQLLALLPMWTALPIHGLVLATGSTFFVVQSESLYSDPVLSINVLFLLQGFVTVIVPYVHDFLVSGWIKKLPMHHVRPIWIQKLLKHRVGL VRIAIGIACSIICCMVSMLVETRRLNLIKTRGDAEPFPMSTVWLVPQFFLIGLVEGLVADGLADFYNVHVDESLEHYESPFNESAIGVGKFLSAALVLTL SGSWFHDTLNTSHLDKYYMLLGILSSVNLCFYLLVMYAYAWKALQVNGSPDPEVST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37900			Major facilitator superfamily ...		Potri.017G145532 [exp]	0	1
AT2G37900			Major facilitator superfamily ...		Potri.017G145500 [exp]	1.00	0.9742
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G052700 [exp]	4.79	0.8651
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.001G063700 [exp]	4.89	0.9175
					Potri.019G105600 [exp]	10.19	0.9059
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.009G143300 [exp]	10.24	0.8531
AT2G44930			Plant protein of unknown funct...		Potri.012G035100 [exp]	13.07	0.8971
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117300 [exp]	13.49	0.8826
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026740 [exp]	14.49	0.8953
AT2G44930			Plant protein of unknown funct...		Potri.012G035001 [exp]	15.16	0.9002
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.003G041700 [exp]	18.13	0.8985

Compare expression of checked genes

Potri.017G145532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.