Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25700 352 / 8e-122 BCH1, B1, CHY1, BETA-OHASE1 ,BETA-OHASE 1 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) AT5G52570 341 / 1e-117 BCH2, B2, CHY2, BETA-OHASE2 ,BETA-OHASE 2 BETA CAROTENOID HYDROXYLASE 2, beta-carotene hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074000 [exp] 466 / 6e-167 AT4G25700 363 / 3e-126 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Potri.001G100200 [exp] 319 / 3e-109 AT4G25700 323 / 1e-110 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039278 [exp] 377 / 1e-131 AT4G25700 418 / 7e-148 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Lus10027515 [exp] 372 / 2e-129 AT4G25700 419 / 1e-148 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.017G145700.6 pacid=42814475 polypeptide=Potri.017G145700.6.p locus=Potri.017G145700 ID=Potri.017G145700.6.v4.1 annot-version=v4.1 ATGGCGGCAGGACTCACCGCCGCCACTGTACCCAAACCCTTCCGGTACAACTCCGTCTCTCACCTCCTTCCAAAACCAGTAACAGCAGCCTCACTTTTCT TCCCACCAATTAGACACCAAAGCTTTTTACACTATGGAACAAAAGTTCCAAGAAAAACAAGCCTTGCTGTATGTTTTGTAGTTGAAGATCAAACAAAACC GAGCAGTGCCCATATCGAGAATCAACAAGAAGAGGTGCCTAAAGATGTTAATGAAAATCAGATCTCGACACCTCGCGTGGCAGAAAGATTGGAAAGAAAG AGAAAAGAAAGAGTTACTTATTTGATTGCTGCTGTTATGTCTAGTCTTGGGATTACTTCCATGGCTGTTATGGCTGTTTATTACAGATTTTATTGGCTTG AGGGAGGGGAAGTGCCCTTGTCTGAAATGTTTGGTACATTTGCTCTTTCAGTAGGTGCTGCTGTGGGGATGGAATTTTGGGCGAGATGGGCTCATAGAGC ACTTTGGCATGCTTCTTTGTGGCATATGCATGAGTCTCACCATAGACCAAGAGATGGGCCGTTTGAGCTAAACGATGTTTTTGCCATAACCAATGCAGTC CCAGCAATTTCCCTTCTCTCCTATGGTTTCTTCAACAAGGGCCTTGTACCTGGTCTTTGTTTTGGTGCTGGTCTTGGAATTACAGTGTTTGGCATAGCCT ATATGTTTGTCCATGATGGCCTTGTTCACAAGAGATTCCCAGTGGGGCCCATTGCCGATGTCCCATACTTCAGAAAGGTAGCAGCAGCTCACAAGATCCA CCACTCGGACAAATTCAATGGTGTCCCATATGGGTTGTTTCTAGGACCTAGGGAAATTGAGGAAGTTGGAGGCCTTGAAGAATTGGAAAGGGAGATAAGT AGGAGAACCAAATCATACAAGGAGTTGTGA
AA sequence Show only first row Show all	>Potri.017G145700.6 pacid=42814475 polypeptide=Potri.017G145700.6.p locus=Potri.017G145700 ID=Potri.017G145700.6.v4.1 annot-version=v4.1 MAAGLTAATVPKPFRYNSVSHLLPKPVTAASLFFPPIRHQSFLHYGTKVPRKTSLAVCFVVEDQTKPSSAHIENQQEEVPKDVNENQISTPRVAERLERK RKERVTYLIAAVMSSLGITSMAVMAVYYRFYWLEGGEVPLSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPRDGPFELNDVFAITNAV PAISLLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHKIHHSDKFNGVPYGLFLGPREIEEVGGLEELEREIS RRTKSYKEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.017G145700 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	3.00	0.8821	Pt-LHT1.2
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	4.89	0.8688	Pt-GT4.1
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	4.89	0.8631
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.006G266500 [exp]	6.48	0.8574
AT5G24600			Protein of unknown function, D...		Potri.015G001300 [exp]	6.63	0.8120
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	8.66	0.8619
AT3G01400			ARM repeat superfamily protein...		Potri.002G118800 [exp]	8.77	0.8354
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.004G028800 [exp]	9.38	0.8259
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Potri.008G151100 [exp]	13.11	0.7517
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.010G108200 [exp]	15.96	0.8006

Compare expression of checked genes

Potri.017G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.