Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01540 400 / 8e-136 Protein kinase superfamily protein (.1.2) AT4G01330 388 / 6e-131 Protein kinase superfamily protein (.1.2) AT4G02630 347 / 6e-115 Protein kinase superfamily protein (.1) AT2G30940 337 / 2e-111 Protein kinase superfamily protein (.1.2) AT2G42960 334 / 7e-110 Protein kinase superfamily protein (.1) AT4G34500 321 / 3e-105 Protein kinase superfamily protein (.1) AT3G59110 318 / 2e-103 Protein kinase superfamily protein (.1) AT1G56720 309 / 6e-100 Protein kinase superfamily protein (.1.2.3) AT5G18500 308 / 8e-100 Protein kinase superfamily protein (.1.2) AT1G09440 306 / 4e-99 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073801 [exp] 419 / 2e-143 AT1G01540 242 / 1e-74 Protein kinase superfamily protein (.1.2) Potri.014G088800 [exp] 404 / 3e-137 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 352 / 3e-116 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 330 / 3e-108 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 329 / 7e-108 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 328 / 2e-107 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 327 / 7e-107 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G059000 [exp] 326 / 2e-106 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G139500 [exp] 322 / 7e-106 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036386 [exp] 385 / 9e-130 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 380 / 1e-127 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 363 / 8e-121 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 351 / 6e-116 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 336 / 5e-110 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 324 / 8e-108 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 323 / 2e-105 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 335 / 3e-105 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10040459 [exp] 317 / 3e-104 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 317 / 1e-103 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G146000.1 pacid=42813556 polypeptide=Potri.017G146000.1.p locus=Potri.017G146000 ID=Potri.017G146000.1.v4.1 annot-version=v4.1 ATGTCCTACAACACATCATCAATTGATACCAAGTTATCAAAGCACACCTCATTTTTTGGCATAAGATTATGGGTTCTAATTCTTGCTTTGATTGCTGTCT TCACTGTTCTGTTTTTAGTCATCATGGCTGCTTGCTTCATCTGTCTTTGTCGCCGAAAATCCAAACCTTTCAATCCCCATTTAAGGCGCTTATTGAACCC CATTTCGATGAAAGGTTTTCTGAATTCTTACACTATTCCATCCAAGGATAAAAGGCTTCTGTCGCATCGGATTTCGGAGGTTGAAATGAACATTGAAAAG TTAGACCATCATCATCAGGTGATTTTAACTGATCAATGTTCTAATGTGAGCACTGGGCTCACAACTCGATGGAGTGGTACTGGTGTAGCTGATTTGGAGC CTACTGCTAGGTACTCTTCTGTGGTTCCTGATGCATGGAGGGGAAACCGGATTGCTTTGAAAGAGATTGAGGTTGTTACGGATGGATTTGCTGACATGAA TATGATTGGAAGTGGAGATTATAGTGTTGCGTATCGGGGCGTGCTGTTGGATACTACCCGAGTGGCTGTAAAGAGGCTACTGAGTAACAGTTGTCAAGCT GAGGACTTCATAGCAGAAGCGGAAATGATAGGGCATATCAGGCACAAGAATTTAGTCAAATTGCTTGGATACTGTATGGAAGAAGGTTACAGAATTCTTG TGAGCGAGTACGTTGACAATGGTAATCTGCATCAATGGCTTTATGGATGTCCTGAACAACCCAGCCCTCTAACATGGGCTATACGGATGAACATCATCCA AGGAATAGCTAAAGGATTAGCCTACCTTCACGAAGATATCGAGCCAAAGTTTATTCATCAGAACCTAAAATCTAGCAACATACTGCTTGATCACCAGTGG AATCCCAAGATATCTGATTTTGGGATTGCTAAACTCTTCGGCCCTCAATGGATCGACATAACAACTCTTGCAATGGAAACATCTGGTTATTTAGCTCATG AACACGAATATACTGGAGTTCTGAGTGAAAAAAGTGACGTTTACAGCTTTGGAATACTTATCATGGAGATCATATGTGCCAGGGCTCCTGTAGATCACAA TCAGCCTCAGGTATATTTGGTTGACTGGTTGAAGTCTATGGTTGCGAATAAGCAAATCATGTTTGTTGTGGATCCTAAATTGCCAGAAATTCCATCATCT AAGGAACTAAAACGAATACTTTTGCTTGCTCTTCGCTGTGTTGATCGTGATATAAAACATAGGCCTACAATGGGGGATGTGATCCACATGCTTGAGCCTC GTGACTTACTGCTTGATGATGATCGTCGAATTAGGAGAGATGGCTCATCTTGTCGATATAAACAGCAAGAGAGTCATATTGTTACCCAATTTGGTGTAGG TGATTTCAGTACACATGAGAAAGAGAGTAACATTAATCTCTATCAGAAAATCTTGCCGACATAA
AA sequence Show only first row Show all	>Potri.017G146000.1 pacid=42813556 polypeptide=Potri.017G146000.1.p locus=Potri.017G146000 ID=Potri.017G146000.1.v4.1 annot-version=v4.1 MSYNTSSIDTKLSKHTSFFGIRLWVLILALIAVFTVLFLVIMAACFICLCRRKSKPFNPHLRRLLNPISMKGFLNSYTIPSKDKRLLSHRISEVEMNIEK LDHHHQVILTDQCSNVSTGLTTRWSGTGVADLEPTARYSSVVPDAWRGNRIALKEIEVVTDGFADMNMIGSGDYSVAYRGVLLDTTRVAVKRLLSNSCQA EDFIAEAEMIGHIRHKNLVKLLGYCMEEGYRILVSEYVDNGNLHQWLYGCPEQPSPLTWAIRMNIIQGIAKGLAYLHEDIEPKFIHQNLKSSNILLDHQW NPKISDFGIAKLFGPQWIDITTLAMETSGYLAHEHEYTGVLSEKSDVYSFGILIMEIICARAPVDHNQPQVYLVDWLKSMVANKQIMFVVDPKLPEIPSS KELKRILLLALRCVDRDIKHRPTMGDVIHMLEPRDLLLDDDRRIRRDGSSCRYKQQESHIVTQFGVGDFSTHEKESNINLYQKILPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01540			Protein kinase superfamily pro...		Potri.017G146000 [exp]	0	1
AT5G13620			unknown protein		Potri.008G045000 [exp]	4.24	0.7419
					Potri.007G009000 [exp]	7.93	0.6831
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	11.40	0.6795
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.006G005000 [exp]	12.48	0.6795
AT3G02100			UDP-Glycosyltransferase superf...		Potri.010G084900 [exp]	16.43	0.6514
AT4G33550			Bifunctional inhibitor/lipid-t...		Potri.009G048800 [exp]	25.51	0.5788
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259000 [exp]	29.29	0.5685
AT1G43730			RNA-directed DNA polymerase (r...		Potri.004G000150 [exp]	37.66	0.5476
AT4G12650			Endomembrane protein 70 protei...		Potri.015G063002 [exp]	62.54	0.5001
AT5G58610			PHD finger transcription facto...		Potri.009G072600 [exp]	75.23	0.5414

Compare expression of checked genes

Potri.017G146000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.