Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28410 71 / 6e-13 F-box/RNI-like superfamily protein (.1) AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) AT5G02920 56 / 1e-08 F-box/RNI-like superfamily protein (.1) AT5G54820 50 / 3e-06 F-box/RNI-like superfamily protein (.1) AT3G03030 50 / 4e-06 F-box/RNI-like superfamily protein (.1) AT4G10400 47 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G44060 47 / 2e-05 F-box/RNI-like superfamily protein (.1) AT4G15060 46 / 4e-05 unknown protein AT2G42730 45 / 0.0001 F-box family protein (.1.2) AT4G09920 44 / 0.0001 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146400 [exp] 608 / 0 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.017G146500 [exp] 329 / 5e-108 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 312 / 7e-100 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G395000 [exp] 127 / 3e-31 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.013G146800 [exp] 82 / 2e-16 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 56 / 3e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.004G034500 [exp] 52 / 5e-07 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.010G134200 [exp] 50 / 2e-06 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G151700 [exp] 45 / 0.0001 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 107 / 2e-24 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10034415 [exp] 56 / 2e-08 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10037604 [exp] 53 / 5e-08 AT5G53635 54 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034414 [exp] 56 / 6e-08 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10039271 [exp] 54 / 9e-08 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10019144 [exp] 54 / 2e-07 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10011410 [exp] 45 / 8e-05 AT1G69630 69 / 9e-13 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 45 / 9e-05 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10030905 [exp] 45 / 9e-05 ND 40 / 0.005 Lus10038967 [exp] 45 / 0.0001 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.017G146300.1 pacid=42813236 polypeptide=Potri.017G146300.1.p locus=Potri.017G146300 ID=Potri.017G146300.1.v4.1 annot-version=v4.1 ATGGATACTGCTAATCTGATATCCCAATTGCCCGACCACATCAGACACCACATTCTCTCTTTTCTTTCAACACCAGAAGTAGTTCGTCTTAGTGTATTGT CCAAGGCATGGCATCGGATTTTCAATTCTTTTCCCATATTCGAGTTCTCCAGTTCCTCTTTCGCAAAAACTTCTGATAGTAGTTTTGAATTTATTATCTT TGTCTACAAATCTTTACTTCTCCAATGCCATCAATACAGAAGCATACCAAAATTTCAGTTTTCTTTCACCCAAGATCGTTGGAGACCTTATGTTTATTCT AAATATCTCCCGTCGCCGTGTGAACTTGATAAACTTATCAGTCGGTGTATAGAAATAGGTACACGGAAGGGTGTTAAGGAGCTTTCTATCTACTTTAGTA TAACTGGATATTATAGACTCCCTGAAGCCGTGTTGTCTGTCAAAGAATTGGTTGTTTGTAGTTTAGGTGGTTGTATTTTCGACGGCGCCATAAATTGGCC TTCTCTGCGTGAGCTCTCTCTGAAAGAAGTTCAGATTTGTGACCAAAGGATTATCAACAATCTCTTCTTTACCTGCCCTTTGATCGAGAAATTTTCTCTA GTGGAATGTTTTGGGCTGAAGTACCTTCACCTTTCAGGATTAAGAAAACTCAAGAAGGTTAAGGTGAAAAGCGGATATCCGCATATGGAGAAGATCGAGA TTGATGTGGTTAGTCTTCATACTTTCTCGTATTCTGCACACCATTATATGAAGACAGATATTGATCTGACCTCTTGCAAAAATCTAGAGGTATTTAAGTT TAAGGGTTATAACATTACAGAAGACATGATTCAATACCTTAATCGTAATTTCCCTGCCCTCAAAGTTTTGGTGTTGCACGGTGAACGCCTTCACTTTCAG AGGATTGAAATTTCTATCCCCCTGCTTGAGAAATTAAACCTCATTGTAGCTCAAATATCGGCAGTGGAAGCTATCATCAATACTCCGAGATTACGGTCAT TCAAATGTGTCATGCACAAAATCCCGTCTTTGTTTTATTTGAACAGTTTACAAGAAGTCACTCTTGAATTATTTGTTGATCTCAACAATATTAAACATGG TGAAAGTTTTCTCGAAGATTTTAGGGAATATCTTAAAAATCTCAACAAAATCAAGCTTGTCACTCTGAGTATTTGCGTTTATTCTTCTTCTGAGATCCAC AAAATAGTCAGCAGTACTGCCTCCAATCCTGTTTTGCTTGAAATCAGTCACTTGAAGCTGGAAACCTTTACCAGGGAGAAAGAAAGCCACGCTCTTGTTG ATGGCTTGTTTTGTATTTGCCGTCCAGAATCTTTATTACTTGTGTCTGGCTGTGCAAGAAACGATGAGTTCATTAAGAATCTTTGCGAGAAACTAGTGCA AATAGAGAATGCAGCTACCTATGCAAATTGTTGGCAGCATCACTTAAAAGGCGTCAAGATCCAGCATTGTGGAAGAAAAGGATATAACAAGATCCTTACA TGTGAAGCTTTCTTAGACTCATTGCAAACTCTGGAACCGAAGGAGAAGATTCGTTTTTTATTCGAATGGTGA
AA sequence Show only first row Show all	>Potri.017G146300.1 pacid=42813236 polypeptide=Potri.017G146300.1.p locus=Potri.017G146300 ID=Potri.017G146300.1.v4.1 annot-version=v4.1 MDTANLISQLPDHIRHHILSFLSTPEVVRLSVLSKAWHRIFNSFPIFEFSSSSFAKTSDSSFEFIIFVYKSLLLQCHQYRSIPKFQFSFTQDRWRPYVYS KYLPSPCELDKLISRCIEIGTRKGVKELSIYFSITGYYRLPEAVLSVKELVVCSLGGCIFDGAINWPSLRELSLKEVQICDQRIINNLFFTCPLIEKFSL VECFGLKYLHLSGLRKLKKVKVKSGYPHMEKIEIDVVSLHTFSYSAHHYMKTDIDLTSCKNLEVFKFKGYNITEDMIQYLNRNFPALKVLVLHGERLHFQ RIEISIPLLEKLNLIVAQISAVEAIINTPRLRSFKCVMHKIPSLFYLNSLQEVTLELFVDLNNIKHGESFLEDFREYLKNLNKIKLVTLSICVYSSSEIH KIVSSTASNPVLLEISHLKLETFTREKESHALVDGLFCICRPESLLLVSGCARNDEFIKNLCEKLVQIENAATYANCWQHHLKGVKIQHCGRKGYNKILT CEAFLDSLQTLEPKEKIRFLFEW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02700			F-box/RNI-like superfamily pro...		Potri.017G146300 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	41.71	0.7631
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.006G152600 [exp]	53.06	0.7342
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Potri.002G235950 [exp]	69.59	0.6804
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.012G129300 [exp]	82.41	0.7407
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.008G117400 [exp]	118.19	0.7194
					Potri.013G160350 [exp]	118.49	0.7058
AT2G06255		ELF4-L3	ELF4-like 3 (.1)		Potri.019G131700 [exp]	125.53	0.7047
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Potri.002G059400 [exp]	129.16	0.6987
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Potri.008G071100 [exp]	149.93	0.6615	DREB1,Pt-ABI4.1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.002G177032 [exp]	152.97	0.6919

Compare expression of checked genes

Potri.017G146300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.