Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) AT5G02700 76 / 1e-14 F-box/RNI-like superfamily protein (.1) AT5G02920 74 / 1e-14 F-box/RNI-like superfamily protein (.1) AT5G02930 72 / 2e-13 F-box/RNI-like superfamily protein (.1) AT4G03220 65 / 5e-11 Protein with RNI-like/FBD-like domains (.1) AT5G56420 64 / 8e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G62430 64 / 9e-11 Protein with RNI-like/FBD-like domains (.1) AT4G14103 63 / 2e-10 F-box/RNI-like superfamily protein (.1.2) AT3G58880 63 / 2e-10 F-box/RNI-like superfamily protein (.1) AT5G03100 61 / 5e-10 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146300 [exp] 623 / 0 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.017G146500 [exp] 372 / 7e-125 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 340 / 1e-110 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G395000 [exp] 144 / 3e-37 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.013G146800 [exp] 101 / 1e-22 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 70 / 9e-13 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 67 / 1e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 66 / 2e-11 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 66 / 2e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 115 / 8e-27 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10039271 [exp] 75 / 2e-14 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042272 [exp] 59 / 4e-09 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10037604 [exp] 54 / 2e-08 AT5G53635 54 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029952 [exp] 56 / 4e-08 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 54 / 2e-07 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10037440 [exp] 54 / 2e-07 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 54 / 2e-07 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 53 / 2e-07 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10011410 [exp] 52 / 4e-07 AT1G69630 69 / 9e-13 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.017G146400.4 pacid=42813546 polypeptide=Potri.017G146400.4.p locus=Potri.017G146400 ID=Potri.017G146400.4.v4.1 annot-version=v4.1 ATGAACACAAGTTCTATGGATGCTGCTGATCGGATATCCCAATTGCCTGACCACATCAAACATCGAATTTTCTCTTTTCTTTCAACACCAGAGGTGGTTC GTCTTAGTGTCTTGTCCAAGCCATGGCATCAGGTTTTCACTTCTTTTCCCATATCTGAGTTCTCCTGTCCCTCTTTTTTCACAAAAAAATCTGACAGAAG TTACGAATTCTGTAACTTTGTCTACAAATCTTTGCTTCGACAATGCCGACTATACAGAAGCATACCAAGATTTCAGTTGTCTGTCAGTACCAGAGATCTT TGTAGACCTTTTCCTTATTGTAAATTCATCAATCGGTGTATAGAACTAAGTACACAGAAGGGTGTTAAGGAGCTTTCTATCTACTTTTGTATGCCTCTAT ATCACAGACTACCTGAAGCCATGTTGTCTGTCAAAGAATTGGTTGTTTGTAAGTTAGCTGGTTGTCTCCTCAAAGGCAACGTAAATTGGCCTTCTCTGCG TGTGCTCTCTCTGAAAAAAGTTGAAATTTGTGACCAAAGTATTATCGACAATCTCATCTTTACCTGCCCTTTCATCGAGAAATTGGCTCTAATAGAATGT AATGGGTTAAGGTACCTTCACCTTTCAGGTTTAAGAAAACTCAAGAAAGTTAAGGTGAAAAGCCAAATCTCTCCGCCTCTGGAGAAGATTGAGATTGACG TGGTTAGTCTTCAGACTTTCTCTTATTCTGCATCCTACAAGGAGAAGACAGATATTGATCTGACCTCTTGCAAAAATCTAGAGGTATTTAAGTACAAGCA TGGTATGATTACAGAAGACCTGATTCAAGGCCTTAATTGTAATTTCCCTGCCCTCAAAGTTTTGGTGTTGCACGGTTATCGCCATCACATTCAGAGGATT GAGATTTCTATCCCCCTGCTTGAGAAATTAAACCTCTCTTTACCTGACTTGTCGGCAGAGGAAGCTATCATCAATGCTCCAAGATTACGGTCATTCAAAT GTTACATGGAAAACATCCCGCCTTTGTTTTCTTTGAATCAAACAAGTTTACAAGAAGTTGCTCTTAAATTATCTCTTGATCTCATCTATTTTCAACAGCG TGAAAGTTTTCGCGAAGATTTTATGGAAATTATTGAAAGTTTCAACCAAATCAAGCTTGTCACTCTGCGTTTTACCTACTATTCCTCGTCTGTAATCAAC AAAATAGTCAGCAAAGTCTCCAATCCTGTTTTGCTTGATATCAGGCACTTGAAGCTGAAAACCTATATAGACGGCACGGAGAAAGTAAACGTCGCTCTTG TTGATGACTTGTTTTGTATTTGCCGTCCTGAATCTTTATTACTTGTGTCTGGCTGTGGAGGAAACGATGCGTTCATGAAGATTCTTTGCAAGAAACTAGT GCGCAGAGTGAAACATAAAAATTATTCTGCAGCTGCCCATGTCAAATGTTGGCAGCGTGACTTAAAAGGCGTCAAGATCGAGCATTTTGGAAGAAATGGA TATAAGAAGGTTGTTACATGTCATGCTTTCTTAGATTCATTCCAAATTCTGGAACCGAAGCAGAAGATTCGTTTTGTATTCGAATGGTGA
AA sequence Show only first row Show all	>Potri.017G146400.4 pacid=42813546 polypeptide=Potri.017G146400.4.p locus=Potri.017G146400 ID=Potri.017G146400.4.v4.1 annot-version=v4.1 MNTSSMDAADRISQLPDHIKHRIFSFLSTPEVVRLSVLSKPWHQVFTSFPISEFSCPSFFTKKSDRSYEFCNFVYKSLLRQCRLYRSIPRFQLSVSTRDL CRPFPYCKFINRCIELSTQKGVKELSIYFCMPLYHRLPEAMLSVKELVVCKLAGCLLKGNVNWPSLRVLSLKKVEICDQSIIDNLIFTCPFIEKLALIEC NGLRYLHLSGLRKLKKVKVKSQISPPLEKIEIDVVSLQTFSYSASYKEKTDIDLTSCKNLEVFKYKHGMITEDLIQGLNCNFPALKVLVLHGYRHHIQRI EISIPLLEKLNLSLPDLSAEEAIINAPRLRSFKCYMENIPPLFSLNQTSLQEVALKLSLDLIYFQQRESFREDFMEIIESFNQIKLVTLRFTYYSSSVIN KIVSKVSNPVLLDIRHLKLKTYIDGTEKVNVALVDDLFCICRPESLLLVSGCGGNDAFMKILCKKLVRRVKHKNYSAAAHVKCWQRDLKGVKIEHFGRNG YKKVVTCHAFLDSFQILEPKQKIRFVFEW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28410			F-box/RNI-like superfamily pro...		Potri.017G146400 [exp]	0	1
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	1.00	0.7923
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.015G074000 [exp]	15.39	0.7316	Pt-TPS8.2
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.011G047800 [exp]	16.43	0.7147	DTA4.2
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Potri.003G106300 [exp]	18.76	0.6656
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	20.39	0.6694	Pt-LECRK7.1
AT5G67620			unknown protein		Potri.007G005600 [exp]	22.47	0.7178
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.007G004100 [exp]	22.80	0.6954	Pt-VALRS.2
AT1G09460			Carbohydrate-binding X8 domain...		Potri.013G003500 [exp]	24.65	0.7245
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.002G123300 [exp]	25.78	0.6186
AT1G70950			TPX2 (targeting protein for Xk...		Potri.008G129300 [exp]	26.83	0.6621

Compare expression of checked genes

Potri.017G146400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.