Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G02930 64 / 9e-11 F-box/RNI-like superfamily protein (.1) AT3G58920 57 / 2e-08 F-box/RNI-like superfamily protein (.1) AT5G03100 56 / 2e-08 F-box/RNI-like superfamily protein (.1) AT3G28410 56 / 3e-08 F-box/RNI-like superfamily protein (.1) AT5G02700 56 / 4e-08 F-box/RNI-like superfamily protein (.1) AT5G56420 54 / 8e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G58900 50 / 1e-06 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G18150 49 / 4e-06 RNI-like superfamily protein (.1) AT1G66290 49 / 4e-06 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146400 [exp] 345 / 2e-114 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 332 / 4e-109 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 156 / 4e-42 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G395000 [exp] 82 / 2e-16 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.013G146800 [exp] 74 / 6e-14 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 69 / 2e-12 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 68 / 4e-12 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 59 / 3e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.010G134200 [exp] 52 / 3e-07 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 88 / 3e-18 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10037604 [exp] 55 / 7e-09 AT5G53635 54 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034415 [exp] 52 / 3e-07 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 52 / 4e-07 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 51 / 9e-07 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10011410 [exp] 50 / 1e-06 AT1G69630 69 / 9e-13 F-box/RNI-like superfamily protein (.1) Lus10023036 [exp] 49 / 3e-06 AT1G16930 66 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011409 [exp] 49 / 3e-06 AT1G69630 74 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10024701 [exp] 45 / 8e-06 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 48 / 9e-06 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G146500.2 pacid=42813719 polypeptide=Potri.017G146500.2.p locus=Potri.017G146500 ID=Potri.017G146500.2.v4.1 annot-version=v4.1 ATGAACACAATTTCTATGGATGCTGCTGATCGGATATCCCAGTTGCCTGAACACATCATACACCACATTCTCTCTCTTTTATCAACACCAGAGGTGGTTC GTCTTAGCGTCTTGTCCAAGACATGGCATCAGGTTTTCAATTCTTTTCCCATATCTGAGTTCTCCAGTTCCTCTTTTTTAGTAGAAAATTCTGACAGGAG TTTGGAATTTGCTACCTTTGTCTACAATTCTTTGCTTCGACAATGCCGACAATACAGAAGCATACCAAAATTTCAGTTTTCTGTCACCGATCGTTATTTC AGGACTTGTTTTTTTACTTTCCAACAGCCGTTGCAGCCTCAACTGGCTAAACATATCAATCGCTGTATACGACTGGGTACACAGAAGGGTGTTAAGGAGC TTTCTATCTACTTTTGTGTACCTGACTATTATAGACTACCCGAAGCCACCTTGTCTGTCAAAGAATTGGTTGTTTGTAGGTTAGCTGGTTGTATTCTCAG CGGCCCCATAAATTGGCCTTCTCTTCGTGAGCTCTCCCTGAAACAAGTTAAAATCTGTGACCAAAGGATTTTCGACAATCTCGTCTTTACCTGCCCTTTC ATCGAGAAATTTGCTCTAGTAGAATGTGATGGGTTAAAGTACCTTCACCTTTCAGGTTTAAGAAAACTCAAGAAGGTTAAGGTGAAGAGACAATCTTTTC CGCTTATGGAGAAGATTGAGATTGATGTGGTTAGTCTTCATACTTTCTCTTATTCTCCATTCTACTTTGAGAAGACTCATATTGATCTGACCTCCTGCAA AAATCTAGAGGTATTTAAGTTTAAGGGTTGTACAGAAAGTTTTAGGAAATATCTAAAAAATCTCAACCAAATCAAGCGTGTCACTCTGTGTATTTTCTGT TATTCCTCTTCTGGGTTCGAAAAAATAGTCAGCAAGGTCTCCGATCCTGTACTTCATATCACTCACTTGAAGCTGAAAACCTATATCATAGAGAAAAAAG GCCACTCTCTTGTTGATGTCTTGTTTTGTATTTGCCGTCCAGAATCTTTATTTCTTGTTTCTGGCCGTGGAACCAACGATGAGTTCATGAAGATTCTTTG CAAGAAACTAGTGCGGAGAGTGAAGCATAACCATTTAAACGGTTGGCAGCATGACTTAAAAGGCGTCCAGATCGAGCGTTGTGGAAGAAATGGATATCGG AAGGTTGTTACATGCGATGCTTTCTTAGATTCATTGCAAACTCTTGAACCAAAGGAGACGATTCGTTTTGAATTCGAATGGAGTTTTAATTCTCTTCCTT AA
AA sequence Show only first row Show all	>Potri.017G146500.2 pacid=42813719 polypeptide=Potri.017G146500.2.p locus=Potri.017G146500 ID=Potri.017G146500.2.v4.1 annot-version=v4.1 MNTISMDAADRISQLPEHIIHHILSLLSTPEVVRLSVLSKTWHQVFNSFPISEFSSSSFLVENSDRSLEFATFVYNSLLRQCRQYRSIPKFQFSVTDRYF RTCFFTFQQPLQPQLAKHINRCIRLGTQKGVKELSIYFCVPDYYRLPEATLSVKELVVCRLAGCILSGPINWPSLRELSLKQVKICDQRIFDNLVFTCPF IEKFALVECDGLKYLHLSGLRKLKKVKVKRQSFPLMEKIEIDVVSLHTFSYSPFYFEKTHIDLTSCKNLEVFKFKGCTESFRKYLKNLNQIKRVTLCIFC YSSSGFEKIVSKVSDPVLHITHLKLKTYIIEKKGHSLVDVLFCICRPESLFLVSGRGTNDEFMKILCKKLVRRVKHNHLNGWQHDLKGVQIERCGRNGYR KVVTCDAFLDSLQTLEPKETIRFEFEWSFNSLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02920			F-box/RNI-like superfamily pro...		Potri.017G146500 [exp]	0	1
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	7.34	0.9419	Pt-HSP18.4
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.013G049900 [exp]	7.54	0.9398
AT4G18490			unknown protein		Potri.011G063500 [exp]	7.61	0.9416
AT4G12190			RING/U-box superfamily protein...		Potri.003G145800 [exp]	7.87	0.8842
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	7.87	0.9033
AT4G17020			transcription factor-related (...		Potri.004G041600 [exp]	11.74	0.9335
					Potri.008G062250 [exp]	19.20	0.8710
AT1G65950			Protein kinase superfamily pro...		Potri.004G075100 [exp]	20.78	0.8076
AT1G53420			Leucine-rich repeat transmembr...		Potri.006G014066 [exp]	21.49	0.9231
AT4G19550			zinc ion binding;transcription...		Potri.001G082800 [exp]	23.74	0.8239

Compare expression of checked genes

Potri.017G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.