Plant FIBer expression Database

Potri.017G148000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52800 655 / 0 DNA primases (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014953
[exp]
737 / 0 AT5G52800 680 / 0.0 DNA primases (.1.2.3)
Lus10038837
[exp]
719 / 0 AT5G52800 655 / 0.0 DNA primases (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03121 Herpes_UL52 Herpesviridae UL52/UL70 DNA primase
Representative CDS sequence
>Potri.017G148000.2 pacid=42814076 polypeptide=Potri.017G148000.2.p locus=Potri.017G148000 ID=Potri.017G148000.2.v4.1 annot-version=v4.1
ATGGGATCGAAATCAACAACAATGGAAGACGTAGATAGATTATTCGAATGTTTCAAATGCGGCATTTCTCCTCCTCAATCTGCTGTGAGAGAGAGAAAGA
GAAGTAAAGGAAAAATCAAGAATCAAGGGATTTCAATAAATGAAGCATCTCCTGGTTCAGCTGAGCAACCAAAGAAGAAAATTGCATCAAATGCAGTTGA
AGGAAAGAATGTTAGTCAAGGAAAGCAGATCTCTCCGGTTGTGTTTTATGGGTCTCCACATGGAGTGCCACCAAAAAGACCCATTAGCTTGTTGAGACTT
TTGCGTGAAATTCGCATTGATCTCGCGGAACAACAAAAATCACAATTGAGTAAGGAAGTATGGGCAACATTTCCTAGGCAGAATGAAGCGATGAATTTTG
CAAAAGAGCATGCAGATGTACGCATTTTTAGCTATCAAGATCACCATAATGGACAACGAAGGTTTCTTGTTTCTACATACAGAGAGTTTTGGAGAAGATA
CAAAAACATGGATGCTAAATTTCGCCACCATTATGAAGTGATTCAGGAGGGTTTACCATGCCACCTTTATTTTGATCTGGAGTTCAGTAGGAGAGACAAT
GCAGAAAGAAATGGAGATGAAATGGTCGATCTCTTGATATCAGTCACCCTAGAAGCATTATTTGAAAAGTATTCTATTCAAGGGAACCAGGATTGGATAG
TAGAGCTCGACTCTTCTACTGCAGAAAAGTTCTCTCGCCATTTGATCATCCGCATCCCGAAGACTGCTTTTAAAGACAACACACATGCAGGTGCATTTGT
TTCAGAGATATGCTCTCGGATTCTTAGTACAAGAGGGAGAGATGAAGGATTTGAAAATATGTTTATAAGAAAAGATTCATCCTCTGCTGAACCTCCAAGC
CAACTTTTTATAGATGCTGCTGTATATTCTAGAAACCGCTGCTTTCGCTTAGCTCTTTCATCAAAAGCAGGGAAGAATTCTGTCCTGCTGCCTACTGAGC
GCTTCAAGTGTAAGGACATGTGTGAAGAAGACATGTTCATGTCATCCTTGATCTGCAGCATGGATGTTGATTGCAATAAACTTCTTGTCTGCAAAATGGA
CATGGAATGTATGAAGACCCTGCAATTTGATACGGAGGTAAACAATGATTACAGAAGACACTGCACCCCAAAAGAATTTCCATTGAATGGTGTGCCAAGC
GATACTGGAAACTCACCATTCCCAGCCTTGGACAAATTCATAGAATCTATTGCCTCAATCGGAAATATATCAGGAAAAATACGAAGCTGGTATTGGTTCT
CGGAGTATGGACTGATGGTCTACAGCATGTCCAGAAATAGATACTGTGAACGAATTGGTAGAGAGCATAAAAGCAATCATGTTATGTATGTTGTTGACTT
GAGAAGGGCGGATTATTATCAGAAATGCCATGATCCAGATTGCCAAGGTTACCGATCCCCTTTACGTCCCATCCCTTGGAATGTGATCTCTGATCCTCCA
TATTCTTATGATTCAGTGCAAATGGTGGATCAAATAGGGTCAACAAATGATTATCTTAAACTTCAACACGTTAGCAACGAATGTGAAGATTTTCTGCTTT
GTGATAACAAACATGACCCAGATAGCTGTTCTAAAGATTCTTGGTGGCTTGAAGCCATAAAAGTTGCAGATGATATTGAAAATAAGCAGAGGACATCGAT
GGAACCAGAGTTATGTTGGGGATCAGGGATATGCCTCCAGAGTAGGTTCTCTATGGCAGGCATGTCGCAGAGAAGTTCTCTCAAAATTGACGAAGTAGCT
CCATTGTCTCTGATACTGACTTGGATAGCATTGACGAGGAAGATGACAATTGGTGGACGGCTGTGGAAGAAACTGCATCCCAATCTGAACTTATTCACTT
CAGTTAATAAATGGGTGTTGACAGATGGTTGA
AA sequence
>Potri.017G148000.2 pacid=42814076 polypeptide=Potri.017G148000.2.p locus=Potri.017G148000 ID=Potri.017G148000.2.v4.1 annot-version=v4.1
MGSKSTTMEDVDRLFECFKCGISPPQSAVRERKRSKGKIKNQGISINEASPGSAEQPKKKIASNAVEGKNVSQGKQISPVVFYGSPHGVPPKRPISLLRL
LREIRIDLAEQQKSQLSKEVWATFPRQNEAMNFAKEHADVRIFSYQDHHNGQRRFLVSTYREFWRRYKNMDAKFRHHYEVIQEGLPCHLYFDLEFSRRDN
AERNGDEMVDLLISVTLEALFEKYSIQGNQDWIVELDSSTAEKFSRHLIIRIPKTAFKDNTHAGAFVSEICSRILSTRGRDEGFENMFIRKDSSSAEPPS
QLFIDAAVYSRNRCFRLALSSKAGKNSVLLPTERFKCKDMCEEDMFMSSLICSMDVDCNKLLVCKMDMECMKTLQFDTEVNNDYRRHCTPKEFPLNGVPS
DTGNSPFPALDKFIESIASIGNISGKIRSWYWFSEYGLMVYSMSRNRYCERIGREHKSNHVMYVVDLRRADYYQKCHDPDCQGYRSPLRPIPWNVISDPP
YSYDSVQMVDQIGSTNDYLKLQHVSNECEDFLLCDNKHDPDSCSKDSWWLEAIKVADDIENKQRTSMEPELCWGSGICLQSRFSMAGMSQRSSLKIDEVA
PLSLILTWIALTRKMTIGGRLWKKLHPNLNLFTSVNKWVLTDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52800 DNA primases (.1.2.3) Potri.017G148000
[exp]
0 1
AT5G66750 CHR01, CHA1, SO... SOMNIFEROUS 1, DECREASED DNA M... Potri.019G129740
[exp]
2.44 0.9350
AT1G29630 5'-3' exonuclease family prote... Potri.011G077001
[exp]
4.89 0.9250
AT5G18610 Protein kinase superfamily pro... Potri.010G215100
[exp]
5.91 0.9137
AT3G50150 Plant protein of unknown funct... Potri.016G040100
[exp]
6.00 0.9123
AT3G08900 RGP3 reversibly glycosylated polype... Potri.008G097600
[exp]
6.63 0.9283 Pt-RGP3.4
AT2G41450 N-acetyltransferases;N-acetylt... Potri.006G045100
[exp]
6.92 0.9210
AT5G05240 Uncharacterised conserved prot... Potri.013G157700
[exp]
7.34 0.9023
AT3G54650 FBL17 RNI-like superfamily protein (... Potri.005G218400
[exp]
8.24 0.8919
AT1G50240 FU FUSED, Protein kinase family p... Potri.019G052500
[exp]
10.09 0.9139
AT4G37110 Zinc-finger domain of monoamin... Potri.012G044400
[exp]
10.95 0.9202

Potri.017G148000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.