Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24060 373 / 7e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT3G49140 257 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G59300 150 / 3e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G51560 43 / 0.0003 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072400 [exp] 454 / 1e-156 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.014G151700 [exp] 134 / 4e-34 AT3G59300 523 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G230700 [exp] 130 / 7e-33 AT3G59300 542 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G252300 [exp] 44 / 0.0002 AT1G51560 561 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.008G006400 [exp] 43 / 0.0004 AT1G51560 533 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027532 [exp] 333 / 2e-109 AT5G24060 402 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10039291 [exp] 330 / 4e-108 AT5G24060 400 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10038836 [exp] 256 / 2e-80 AT3G49140 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014952 [exp] 255 / 1e-79 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10034828 [exp] 45 / 7e-05 AT1G51560 508 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10033378 [exp] 45 / 9e-05 AT1G51560 483 / 9e-171 Pyridoxamine 5'-phosphate oxidase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G148600.1 pacid=42814590 polypeptide=Potri.017G148600.1.p locus=Potri.017G148600 ID=Potri.017G148600.1.v4.1 annot-version=v4.1 ATGATGATGGCCATGGCAATGATGATTGAAACCACCACAGCCGTCCGATTCCCCGCCTCCACCACTCCTGCTGCAAACTTCTGCTCCTCCTTGCCCCGCA GCAGCTCTGTCATTCTTTGGAATAAATTTCGAAGACTAAATGGCGTTTCTTTCTTAAGAAGGAGCAGTCATTTAAAGAGTAAGATTCAAGCGTCTGCAGA GAATTTAGATTCAAACTTGGATTCTTCGAAGCAGAATGGTAAACTGCAATACCATCCATCTGAGGGGATTGCAGAGTCAACATCAGAAACAAGTAGTGAT GCTATGCTTACACCTCAAGAAACATGTAGGACTATTGTTGAGGCGAAAAGCAAAGCAACATTAATGTTGACTGGTGTGATCAATGATGATATTCATGAGA ACATTATCTGGCCAGACTTGCCTTATGTGACTGATGAACATGGGAATATATACTTTCAAGTGAAGAATGATGAAGACATTTTGCAAACACTTACTACAGA AAATAATTTTGTGCAAGCCATTATAGGTTTTGATGCCACGGAAATGCTCAGTGAGATGGAGTCATTGGGTACATCAGAAATTGATTTTGGGGTTGAGGAA ATAGAAGAGGAAGATAGTGATGTTGAAGATGGGGCCAATGAGGATGACGACGACTATGATGAGGATTTGGTGGCTGTTCTTGATGACGATGATGATGAGG AAGATGATGATGATGAGGCACTTGGAGACTGGGCAAAATTAGAGACTATGAGCTCTTCTCATCCAATGTATTTTGCCAAAAAGCTGGCTCAGGTTGCTTC AGATGATCCTATAGACTGGATGGAGCAGCCTCCTGCTGGTGTAGCTATCCAGGGCCTTATTAGACCCGCCTTCATGGAAGAGCAATCTGACATCCAGAGA CATATGTCTGGCAATCAGTCTCATCATGCTGGTACAAATCAGGTTGGGCAAAGCATGGAAGGCAAGCTAGAAGAACCTGGTGTGATAAATGGTCATGAAC ATAAGTCAGGATCATCTGAAGATATTTCATTGTGGCGGGAGGAATTGGAAAAGGATGAGGTTCCAAGTAGTGGAACTTCATTTTACAAGCTGGAGATGAT TAAAATTCAGCTGATTTCAGCTCATGGACACCAAACTACAGTTGAAGTAGAAGACTTTAGGAAAGCACAACCTGATGCGATTGCACTTTCGGCAGCCAAA ATCATATCTCGTCTGAAAGCTGGTGGTGAAAAGATTACGCAGGCCTTTAAATCTCTTTGTTGGAGATGCAAGGGTATCCAAGTGGAGGAGGCAACGATTA TTGATGTAGATTCTCTTGGATTTGATTTGAGAGTTTGTTCTGGAACGCAAATCCAAACATTGCGGTTTGCGTTCAATTCAAGGGCAACCTCAGAATATAG TGCTGAAAGACAACTGAATGACTTACTATTCCCAAGGATCCAAAGTAGGCTGCAGAAAAAGAACACTGCTCAAATGCCATAA
AA sequence Show only first row Show all	>Potri.017G148600.1 pacid=42814590 polypeptide=Potri.017G148600.1.p locus=Potri.017G148600 ID=Potri.017G148600.1.v4.1 annot-version=v4.1 MMMAMAMMIETTTAVRFPASTTPAANFCSSLPRSSSVILWNKFRRLNGVSFLRRSSHLKSKIQASAENLDSNLDSSKQNGKLQYHPSEGIAESTSETSSD AMLTPQETCRTIVEAKSKATLMLTGVINDDIHENIIWPDLPYVTDEHGNIYFQVKNDEDILQTLTTENNFVQAIIGFDATEMLSEMESLGTSEIDFGVEE IEEEDSDVEDGANEDDDDYDEDLVAVLDDDDDEEDDDDEALGDWAKLETMSSSHPMYFAKKLAQVASDDPIDWMEQPPAGVAIQGLIRPAFMEEQSDIQR HMSGNQSHHAGTNQVGQSMEGKLEEPGVINGHEHKSGSSEDISLWREELEKDEVPSSGTSFYKLEMIKIQLISAHGHQTTVEVEDFRKAQPDAIALSAAK IISRLKAGGEKITQAFKSLCWRCKGIQVEEATIIDVDSLGFDLRVCSGTQIQTLRFAFNSRATSEYSAERQLNDLLFPRIQSRLQKKNTAQMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49140			Pentatricopeptide repeat (PPR)...		Potri.017G148600 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Potri.004G072400 [exp]	1.73	0.8828
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	4.00	0.8768
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Potri.006G222000 [exp]	12.12	0.8483
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	12.48	0.8802
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.014G029000 [exp]	12.48	0.8350
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	12.64	0.8806
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	15.19	0.8794
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Potri.010G143000 [exp]	15.58	0.8149
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	18.16	0.8716	Pt-COL11.2
AT5G23690			Polynucleotide adenylyltransfe...		Potri.012G105000 [exp]	20.04	0.8210

Compare expression of checked genes

Potri.017G148600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.