Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21190 339 / 4e-116 EMB1417 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18975 163 / 5e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) AT1G04590 130 / 3e-34 EMB2748 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076800 [exp] 167 / 2e-49 AT4G18975 320 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Potri.016G103000 [exp] 140 / 7e-39 AT1G04590 300 / 9e-101 unknown protein Potri.006G091500 [exp] 139 / 1e-38 AT1G04590 272 / 3e-90 unknown protein Potri.016G102800 [exp] 56 / 1e-09 AT1G04590 158 / 2e-48 unknown protein Potri.006G166200 [exp] 45 / 5e-05 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 44 / 0.0002 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G091800 [exp] 43 / 0.0003 AT5G50280 845 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039292 [exp] 321 / 5e-108 AT4G21190 339 / 7e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027535 [exp] 251 / 6e-82 AT4G21190 302 / 5e-103 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028526 [exp] 157 / 1e-45 AT4G18975 327 / 7e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10019008 [exp] 134 / 3e-36 AT1G04590 281 / 5e-93 unknown protein Lus10015943 [exp] 132 / 3e-36 AT1G04590 284 / 3e-95 unknown protein Lus10009120 [exp] 100 / 7e-24 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10027533 [exp] 77 / 5e-17 AT4G21190 58 / 8e-11 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.017G148700.3 pacid=42813483 polypeptide=Potri.017G148700.3.p locus=Potri.017G148700 ID=Potri.017G148700.3.v4.1 annot-version=v4.1 ATGCTTTGTTTAAGATATTCGTTGCCACTAATTCCAAATAGATTTCAGTCCTTTGATACTACCAGGAATACCAAAAGCTGTGTTGTGGTTTGTGCTGCTA AAGGTCCACGACCAAGATATCCGCGAGTTTGGAAAACAAAAAGGAGAATTGGGACTATCTCAAAATCAGCAAAGCTTGTTGATTGTATAAAGGGATTGTC TAATGTCAAGGAGGAAGTGTACGGGGCTCTTGATTCCTTTGTTGCTTGGGAATTGGAGTTCCCACTAATTGCAGTTAAGAAAGCATTAAGAGCTCTGGAG GAGCAACAAGAATGGAAGAGGATAATTCAGGTCACCAAGTGGATGTTAAGCAAAGGGCAAGGAAGGACAATGGGAACTTATTTCACATTAATGAATGCTT TAGCTGAGGATGGAAGACTTGATGAAGTTGAAGAGCTTTGGACAAAATTATTTTCACAGTACTTGGAAGGCACGCCTCGAATGATGTTTGATAAAATGAT TTCTATATATTACAAAAGGGACATGCATGACCAGATATTTGAGATATTTGCTGATATGGAGGAGCTAGGTCTCCGCCCAAGTGTTTCAATTGTCAACATG GTGGGAAATGTCTTCCAGAGATTGGGTATGATGGACAAGTATGAAAAATTAAAGAAAAAATATCCACCACCGAAATGGATTTACCGATACATCAAAGGGA AGCGTGTCAGGGTTCGAGCAAAGAATGACAATGAAGCTGGTGATGTTAACAGTGTTGCAAGTGGGGATGAGGAGGCTTCCCATGATGATGAATTAGATGG CATTAATGATGTTGCAAGTGGGGATGAGGAGGCTTCCCATGACAATAAATTGGATGGCATCAATGATGTTGCAAGTGAGGATGAGGAGGCTTTCCATGAT GAGAGTGAAGTAGGCATTCGCATAGATGCGAATGAAGTCGGCGTGGAAACCAATTTAAGTTCCAATGATTTTAGTGTTGAAGCTAACAGTTCTCTCTCTG AGTGTCAAAATCAGGATCGATTGCATTGGGAGCATAATCAACCTTCAGGTGTCAGCAATTCCAGTTAG
AA sequence Show only first row Show all	>Potri.017G148700.3 pacid=42813483 polypeptide=Potri.017G148700.3.p locus=Potri.017G148700 ID=Potri.017G148700.3.v4.1 annot-version=v4.1 MLCLRYSLPLIPNRFQSFDTTRNTKSCVVVCAAKGPRPRYPRVWKTKRRIGTISKSAKLVDCIKGLSNVKEEVYGALDSFVAWELEFPLIAVKKALRALE EQQEWKRIIQVTKWMLSKGQGRTMGTYFTLMNALAEDGRLDEVEELWTKLFSQYLEGTPRMMFDKMISIYYKRDMHDQIFEIFADMEELGLRPSVSIVNM VGNVFQRLGMMDKYEKLKKKYPPPKWIYRYIKGKRVRVRAKNDNEAGDVNSVASGDEEASHDDELDGINDVASGDEEASHDNKLDGINDVASEDEEAFHD ESEVGIRIDANEVGVETNLSSNDFSVEANSSLSECQNQDRLHWEHNQPSGVSNSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Potri.017G148700 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	2.44	0.9695
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.016G006800 [exp]	4.00	0.9655
AT5G22340			unknown protein		Potri.009G160500 [exp]	6.00	0.9601
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	6.78	0.9399
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	6.92	0.9650
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	7.48	0.9566
AT4G18975			Pentatricopeptide repeat (PPR)...		Potri.011G076800 [exp]	7.61	0.9364
AT5G62840			Phosphoglycerate mutase family...		Potri.015G074700 [exp]	7.74	0.9601
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	8.94	0.9554
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	9.48	0.9590

Compare expression of checked genes

Potri.017G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.