Plant FIBer expression Database

Potri.017G148900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62650 619 / 0 Tic22-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G072100
[exp]
833 / 0 AT5G62650 643 / 0.0 Tic22-like family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027537
[exp]
619 / 0 AT5G62650 604 / 0.0 Tic22-like family protein (.1)
Lus10039294
[exp]
619 / 0 AT5G62650 605 / 0.0 Tic22-like family protein (.1)
Lus10010502
[exp]
82 / 6e-19 AT5G62650 69 / 2e-15 Tic22-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04278 Tic22 Tic22-like family
Representative CDS sequence
>Potri.017G148900.1 pacid=42814105 polypeptide=Potri.017G148900.1.p locus=Potri.017G148900 ID=Potri.017G148900.1.v4.1 annot-version=v4.1
ATGCCTTCACCACCAGAACCACCACAGCACCGCCACAACAACCACCACCTCTCTAACTTCCTCAACTCAACCACCAAAACCCTCTTTTCTCTTCTCTCTC
CTCCCAACATCCTACCTTTAGCACCACCCCAACCCAAAATTTGCATATCTTTCCACCTCCCCAACGCCCCCCTCCCACTCACTCAATCAACTCTCTCTCT
CTTTGAGTCAACTCAGCCTGACTCATTATCCCCTTCAAAATCATCATCAGCCTCTGTCAAGGACATATCTTCTGCTGAGTCTAATTCTGGGTTTCCATCA
GCAGTCAGGATTGGAAGGCTTAATCCTAATGGAAATGGTGGCGGGCCTGCTTTTGTGGGGCAGGTCTTTAGCATGTGTGATCTTTCAGGGACTGGTCTCA
TGGCTGTTTCTACTCATTTTGATGTTCCCTTCATTTCCAAAAGGACACCCGAGTGGCTTAAGAAGATATTTGCAACGGTTACCAAGAGCGAGAGGAATGG
TCCCGTGTTCCGTTTCTTCATGGATTTAGGCGATGCTGTTGCATATGTTAAACGGCTGAATATTCCAAGTGGTGTGGTGGGTGCTTGTCGTCTTGACTTA
GCATATGAACACTTCAAGGAGAAACCTCACTTGTTTCAGTTTGTTCCAAATGAGAAACAGGTCAAGGCAGCCAACCAACTTCTGAAGTCCATTCCACATG
GTGATGGGAGCAGGAGGGTTGATGGAGTTCCTGTTTTCAGTGCTCAAAACTTAGATATTGCAATAGCTACCACAGACGGGATTAAGTGGTATACTCCATA
CTTCTTTGATAAAAACATGCTGGATAACATTCTTGAGGAGTCTGTTGATCAGCATTTTCATGCTTTAATTCAAACCCGGCACATGCAACGCCGACGTGAT
GTGATTGATGATAATGTTGCCGCAGAAGTGATTGAAGAAATGGGGGACAGCCTATTGGAGCCACCAGAGGTTCAGGAAGTGCTAGATGAGATGGGGCATC
CTGCAATACCTTTGAGTGTCATTTCGAAGGCTGCAGAAATTCAGCTTCTTTATGCTGTTGACAAAGTTCTTCTTGGTAATAGGTGGTTGAGAAAAGCCAC
TGGCATTCAGCCAAAATTTCCGTACTTGGTTGATTCATTTGAAAGAAGGAGTGCATCTTCTTTACGAAGAGCGTTAGAATCAACCAGCTGTCTTGCCAAC
AGTAAAATAGATGATAGCACTTCAGAACATAAATTAAAAGACAATGTTCAAACAGATCATGAACAGAGAAAAGATCTGCGGTTGCCATTTGGAGATTGGT
TTAGTCATCCATGGTTGAAAAAACACAGCAAATCGGAACGGGAATCAGACACAAGAAAGGAAGGCTTATCAAAGGATTGCTTAAAATGGAAGTCAGAGTC
CAATCCTTTTCTTCCGAAGGTGACGATGGTTGGTGTCTCAACTGGAGATGCAGGACAATTGAGCAAATCTAGTTTGAAGAAGACTATGGAGGATCTGACA
AAAGAGCTGGAGCAAACAGATGAGGCAAATGACAGTTTTATTAGCAATAGTAGTAGTGAGTTCAAAGTCAACGATAGGGATCCACTATTTGTTGCAAATG
TGGGCGATTACTATTCAGGCATGGCAAAGACAGGCATCTCTCGATGA
AA sequence
>Potri.017G148900.1 pacid=42814105 polypeptide=Potri.017G148900.1.p locus=Potri.017G148900 ID=Potri.017G148900.1.v4.1 annot-version=v4.1
MPSPPEPPQHRHNNHHLSNFLNSTTKTLFSLLSPPNILPLAPPQPKICISFHLPNAPLPLTQSTLSLFESTQPDSLSPSKSSSASVKDISSAESNSGFPS
AVRIGRLNPNGNGGGPAFVGQVFSMCDLSGTGLMAVSTHFDVPFISKRTPEWLKKIFATVTKSERNGPVFRFFMDLGDAVAYVKRLNIPSGVVGACRLDL
AYEHFKEKPHLFQFVPNEKQVKAANQLLKSIPHGDGSRRVDGVPVFSAQNLDIAIATTDGIKWYTPYFFDKNMLDNILEESVDQHFHALIQTRHMQRRRD
VIDDNVAAEVIEEMGDSLLEPPEVQEVLDEMGHPAIPLSVISKAAEIQLLYAVDKVLLGNRWLRKATGIQPKFPYLVDSFERRSASSLRRALESTSCLAN
SKIDDSTSEHKLKDNVQTDHEQRKDLRLPFGDWFSHPWLKKHSKSERESDTRKEGLSKDCLKWKSESNPFLPKVTMVGVSTGDAGQLSKSSLKKTMEDLT
KELEQTDEANDSFISNSSSEFKVNDRDPLFVANVGDYYSGMAKTGISR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62650 Tic22-like family protein (.1) Potri.017G148900
[exp]
0 1
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Potri.015G091700
[exp]
6.63 0.9364
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Potri.001G376600
[exp]
9.84 0.8578
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
12.08 0.9294 Pt-PDE316.1
AT5G16620 PDE120, TIC40, ... pigment defective embryo 120, ... Potri.017G129800
[exp]
14.89 0.9122
AT1G51100 unknown protein Potri.001G417350
[exp]
15.49 0.9149
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Potri.006G205000
[exp]
15.49 0.9283
AT1G23180 ARM repeat superfamily protein... Potri.008G131900
[exp]
18.97 0.9264
AT2G04030 Hsp88.1, AtHsp9... HEAT SHOCK PROTEIN 88.1, EMBRY... Potri.008G112700
[exp]
27.23 0.9114
AT3G04260 PDE324, PTAC3 PIGMENT DEFECTIVE 324, plastid... Potri.019G025100
[exp]
29.66 0.9074
AT5G66520 Tetratricopeptide repeat (TPR)... Potri.004G237000
[exp]
30.03 0.9065

Potri.017G148900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.