Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11260 419 / 8e-147 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT4G23570 407 / 2e-142 SGT1A phosphatase-related (.1.2.3) AT2G42810 76 / 5e-15 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 72 / 7e-14 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12270 62 / 2e-10 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G62740 62 / 2e-10 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 61 / 7e-10 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G17970 58 / 5e-09 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 57 / 9e-09 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G04710 56 / 2e-08 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071100 [exp] 597 / 0 AT4G11260 385 / 1e-133 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.008G156500 [exp] 72 / 7e-14 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 69 / 5e-13 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G141800 [exp] 67 / 6e-12 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.012G046900 [exp] 63 / 1e-10 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G119500 [exp] 62 / 3e-10 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 62 / 3e-10 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.015G038600 [exp] 62 / 3e-10 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.005G054800 [exp] 55 / 5e-08 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027540 [exp] 506 / 0 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10039297 [exp] 491 / 6e-175 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10024680 [exp] 449 / 2e-158 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10032305 [exp] 399 / 3e-139 AT4G11260 417 / 9e-147 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10028919 [exp] 65 / 3e-11 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 64 / 3e-11 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021905 [exp] 64 / 4e-11 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020412 [exp] 63 / 5e-11 AT3G07370 358 / 2e-125 carboxyl terminus of HSC70-interacting protein (.1) Lus10032234 [exp] 63 / 2e-10 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 62 / 2e-10 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF04969 [poplar] [flax] CS CS domain CL0190 [poplar] [flax] PF05002 [poplar] [flax] SGS SGS domain CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.017G149800.1 pacid=42814414 polypeptide=Potri.017G149800.1.p locus=Potri.017G149800 ID=Potri.017G149800.1.v4.1 annot-version=v4.1 ATGGCGGATCTGGAGAGGAAAGCGAAAGAAGCATTCATCGATGACCACTTCGAGCTAGCCGTAGATCTCTACACGCAAGCCATCGCGCTTAACCCTACCA ATCCTGACCTCTTCGCCGACCGCGCGCAAGCCAATATCAAACTCAACAATTTCACCGAGGCTGTTGCGGATGCTAGCAGAGCAATTGCGTTGGATGCCTC CTTGGCTAAAGCTTACTTGCGGAAAGGTATTGCATGTATGAAACTTGAGGAATATCAGACTGCTAAGGCAGCATTGGAAGTAGGCGCGTCTTTGGCACCG GGAGAGTCTAGATTCACTAACTTGATCAAGGAATGTGACGAGTGCATCGCAGAGGAAACTGGTGGGTCGAAAAATCATGCAGCAGATGCCCCAGTTAACA CTGTTTCCATAGAAGATGTCGAGCCAGAAGACACTTCTAGTCAGGCTCCAATGGTAATACCTTCCAAGCCAAAGTACAGGCATGAATTCTACCAAAAGCC AGAAGAGGTGGTTGTGAGTATATTTGCAAAGGGCGTACAAGCCAGTTGGATTAGTGTTGATTTTGGTGAACAGATTCTAAGTGTTAGGATTGAGGTTCCT GGTGAAGATGGGTATCATTTTCAACCTCGCTTATTTGGGAAGATAATACCCGACAAGTGCAAGTATAACATCTTGTCCACCAAAGTTGAATTTCGACTTG CAAAAGCTGAACCAGGTCTGCACTGGGCATCTCTTGAATACAACAAGGAGACAGCAGTAGTACAAAGGATTGCTGTATCCTCTGAAATTGTTCAAAAGCC TACCTATTCCTCATCAAAACCAAAACGAGTTGATTGGGACAAGATTGAAGCTCAAGTAAAGAAGGAGGAGAAAGAAGAGAAGCTAGATGGGGATGCAGCT TTGAACAAATTTTTCCGAGAAATTTATCAAGATGCTGATGAAGACACAAGAAGAGCCATGAAAAAATCTTTTGTGGAGTCCAACGGCACGGTGCTGTCGA CAAACTGGAAAGAAGTGGGTACGAAGAAGGTGGAAGGAAGCCCTCCTGATGGGATGGAGATGAGGAAATGGGAGTACTGA
AA sequence Show only first row Show all	>Potri.017G149800.1 pacid=42814414 polypeptide=Potri.017G149800.1.p locus=Potri.017G149800 ID=Potri.017G149800.1.v4.1 annot-version=v4.1 MADLERKAKEAFIDDHFELAVDLYTQAIALNPTNPDLFADRAQANIKLNNFTEAVADASRAIALDASLAKAYLRKGIACMKLEEYQTAKAALEVGASLAP GESRFTNLIKECDECIAEETGGSKNHAADAPVNTVSIEDVEPEDTSSQAPMVIPSKPKYRHEFYQKPEEVVVSIFAKGVQASWISVDFGEQILSVRIEVP GEDGYHFQPRLFGKIIPDKCKYNILSTKVEFRLAKAEPGLHWASLEYNKETAVVQRIAVSSEIVQKPTYSSSKPKRVDWDKIEAQVKKEEKEEKLDGDAA LNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMEMRKWEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	0	1
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	1.00	0.7979
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	3.46	0.6566
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.014G137100 [exp]	10.81	0.6444
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.004G167200 [exp]	11.22	0.6761
AT5G12320			ankyrin repeat family protein ...		Potri.001G276100 [exp]	12.48	0.6771
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	12.84	0.6281
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.001G311600 [exp]	16.94	0.6492
AT1G51200			A20/AN1-like zinc finger famil...		Potri.001G018600 [exp]	18.97	0.6504
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.005G105700 [exp]	21.74	0.6333
AT5G59970			Histone superfamily protein (....		Potri.010G213900 [exp]	30.41	0.6073	HFO913

Compare expression of checked genes

Potri.017G149800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.