Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65730 936 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G17650 908 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 899 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G27020 712 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G53550 681 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G41000 681 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT5G24380 658 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 652 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G45450 302 / 1e-98 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G151800 [exp] 1200 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 1145 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069200 [exp] 1123 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 971 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 764 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 703 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.011G055224 [exp] 671 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 632 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 608 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013323 [exp] 949 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 941 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 939 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10010205 [exp] 749 / 0 AT1G65730 873 / 0.0 YELLOW STRIPE like 7 (.1) Lus10017406 [exp] 746 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10035194 [exp] 708 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10012549 [exp] 701 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10041544 [exp] 690 / 0 AT3G27020 1134 / 0.0 YELLOW STRIPE like 6 (.1) Lus10022360 [exp] 679 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032024 [exp] 676 / 0 AT3G27020 1055 / 0.0 YELLOW STRIPE like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.017G150500.1 pacid=42812831 polypeptide=Potri.017G150500.1.p locus=Potri.017G150500 ID=Potri.017G150500.1.v4.1 annot-version=v4.1 ATGGACCGTAATGGAAGAGATGACCTCAAGGTCGAGAATGGTTATGATTTGGAGGATGATCATGATCACAAAAAGAAGGACAAGAAAGAGGAACAAGAAG AAGAGTTGTCAGTGGAAAGAATATTTGAGAATCAAGAAGTGCCATCTTGGAGGAATCAGCTGACACTGAGGGCCTTTGTGGTGAGCTTCGTGTTGAGCAT TTTGTTCAGCGTCATAGTAATGAAGCTCAATCTTACAACTGGTATCATACCTTCCCTCAATGTCTCTGCTGGCCTTCTGGGCTTCTTTTTTATCAAGACC TGGACGAAATTTCTTGAAAAGTCTGGCCTTTTGAAGCAGCCCTTTACGAGGCAAGAGAACACTGTTATCCAGACTTGTGTGGTTGCATCCTCTGGCATTG CCTTTAGTGGAGGCTTTGGGAGTTATCTGTTTGGAATGAGTGAAACCGTGGCCGAACAATCAACGGAAGATAGTGATACCTTTAAGAACCCATCTCTGTC ATGGATGATTGGCTTTCTGTTTGTTGTTAGCTTTCTTGGACTCTTTTCAGTGGTGCCTCTTCGAAAGGTCATGATTATAGACTTCAAATTGACATATCCA AGTGGCACTGCAACTGCTTATCTCATCAACAGCTTCCACACTCCTTCAGGAGCCAAGCTAGCAAAAAAACAAGTGAAAGCGTTGGGCAAGTTCTTATCAT TCAGCTTCTTGTGGGGTTTCTTTCAGTGGTTCTACACTGCAGGAGATGGTTGTGGATTTGCTGAGTTCCCCTCACTCGGACTTAAAGCATATGAAAACAA ATTTTTCTTTGATTTCTCAGCAACATATGTTGGAGTTGGAATGATTTGCCCCTACATCATAAACATATCAGTATTGCTTGGAGGAATTCTTTCCTGGGGT CTCATGTGGCCTCTCATAGATACAAAAAAGGGTGATTGGTATTCAGCAGACCTAAAACCTAACAGCCTACATGGCCTCCAAGGTTACAAGGTATTTATTG CCATTGCCCTGATCTTGGGTGACGGTCTGTACAACTTCTTCAAGGTGCTAAGCCGAACACTCACTGCCTTGTTTTTTCAACTTCAAAGGAGCGATGCAAC TGGTGTCCTCCCTATTGCGGACCGTTCCTCTCCCGAGACATCCAGGATCTCATACAATGATCAACGCCGCACCCAACTCTTTCTCAAAGATCAAATTCCA ACATGGTTTGCTGTTGCAGGCTATGTCGCAATTGCTGCTATCTCTACAGCCACGCTACCGCATATATTTCCCGAACTCAAATGGTATTACATATTGGTTA TCTACGTCTTTGCCCCAGCCCTTGCATTCTGTAATGCTTATGGCTGTGGCCTCACTGACTGGTCCCTTGCTTCCACCTATGGGAAGCTCGCAATTTTTGT AATTGGAGCATGGGCTGGTGCCTCTCATGGTGGAGTTCTTGCAGGACTAGCGGCCTGTGGAGTCATGATGAATATCGTCTCCACAGCCTCCGACCTCTCT CAAGATTTCAAGACTGGTTATCTAACCCTTTCTTCACCACGGTCCATGTTTGTGAGCCAACTAATTGGCACTGCAATGGGTTGCGTTATTTCACCTTGTG TCTTTTGGCTGTTTTTCAAGGCCTTCAAGGATCTTGGGACTCCTGGAAGTCAATACCCTGCTCCTAATGCTACTGTATTTCGAAACATGGCTATATTGGG GGTAGACGGATTCTCGTCTCTACCAAAGAATTGCCTCTATCTTTGCTATGGGTTCTTCAGTGCAGCTATTCTCATAAATTTAATGAAGGATGCATTGGGT AAGAAATGGGCTAGGTTCATTCCCAATCCAATGGCGATGGCTATACCTTTCTATATTGGCTCATACTTTGCCATCGACATGTGTGTGGGAAGCTTGATTC TATTTATCTGGGAAAAGATTGACAAGGCAAAGGCAGATGCTTTTGGGCCAGCAGTGGCTTCTGGTTTGATTTGCGGGGATGGGATATGGACTTTGCCTAG TGCGATACTTGCTCTAGTAGGAGTAAAACCTCCCATTTGTATGAAGTTTTTGTCAAGGGGAACAAATGCTAAGGTCGATGCGTTCTTAGGGTCATAA
AA sequence Show only first row Show all	>Potri.017G150500.1 pacid=42812831 polypeptide=Potri.017G150500.1.p locus=Potri.017G150500 ID=Potri.017G150500.1.v4.1 annot-version=v4.1 MDRNGRDDLKVENGYDLEDDHDHKKKDKKEEQEEELSVERIFENQEVPSWRNQLTLRAFVVSFVLSILFSVIVMKLNLTTGIIPSLNVSAGLLGFFFIKT WTKFLEKSGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSETVAEQSTEDSDTFKNPSLSWMIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYP SGTATAYLINSFHTPSGAKLAKKQVKALGKFLSFSFLWGFFQWFYTAGDGCGFAEFPSLGLKAYENKFFFDFSATYVGVGMICPYIINISVLLGGILSWG LMWPLIDTKKGDWYSADLKPNSLHGLQGYKVFIAIALILGDGLYNFFKVLSRTLTALFFQLQRSDATGVLPIADRSSPETSRISYNDQRRTQLFLKDQIP TWFAVAGYVAIAAISTATLPHIFPELKWYYILVIYVFAPALAFCNAYGCGLTDWSLASTYGKLAIFVIGAWAGASHGGVLAGLAACGVMMNIVSTASDLS QDFKTGYLTLSSPRSMFVSQLIGTAMGCVISPCVFWLFFKAFKDLGTPGSQYPAPNATVFRNMAILGVDGFSSLPKNCLYLCYGFFSAAILINLMKDALG KKWARFIPNPMAMAIPFYIGSYFAIDMCVGSLILFIWEKIDKAKADAFGPAVASGLICGDGIWTLPSAILALVGVKPPICMKFLSRGTNAKVDAFLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G150500 [exp]	0	1
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151600 [exp]	1.41	0.9526
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G150301 [exp]	3.46	0.9354
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Potri.003G139700 [exp]	6.92	0.9137
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	7.93	0.9260
AT1G18390			Protein kinase superfamily pro...		Potri.015G045101 [exp]	9.79	0.9285
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	10.48	0.9328
AT1G06540			unknown protein		Potri.005G201300 [exp]	11.95	0.9208
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116550 [exp]	15.68	0.8838
AT5G38260			Protein kinase superfamily pro...		Potri.017G034500 [exp]	17.32	0.9248
AT1G66920			Protein kinase superfamily pro...		Potri.017G117285 [exp]	20.49	0.9199

Compare expression of checked genes

Potri.017G150500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.