Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 281 / 1e-85 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 251 / 2e-74 EFR EF-TU receptor (.1) AT3G47090 251 / 2e-74 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 241 / 5e-71 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 238 / 6e-70 Leucine-rich repeat protein kinase family protein (.1) AT4G08850 164 / 4e-44 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G46330 162 / 3e-43 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 155 / 6e-41 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 152 / 8e-40 Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 145 / 2e-37 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G152500 [exp] 696 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 649 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 616 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G069001 [exp] 499 / 3e-169 AT3G47570 676 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 456 / 1e-151 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 446 / 9e-148 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033900 [exp] 438 / 8e-146 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 417 / 8e-137 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 414 / 1e-135 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030846 [exp] 308 / 5e-95 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 302 / 4e-93 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 301 / 8e-93 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 299 / 5e-92 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 298 / 7e-92 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030852 [exp] 290 / 3e-91 AT3G47570 447 / 1e-144 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 297 / 2e-90 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 294 / 4e-90 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 292 / 1e-89 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 291 / 2e-89 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.017G152080.1 pacid=42814219 polypeptide=Potri.017G152080.1.p locus=Potri.017G152080 ID=Potri.017G152080.1.v4.1 annot-version=v4.1 ATGCCTAACCTGAGGGTTTTTTCAATTCAAGAAAGTGGGCTTGGAAATGACGAGGATGATGATTTGTCGTTTCTCTACACCCTCTCAAACAGCAGCAAGT TGGAAGTTTTGGCTATAGATGGGAACAATTTTGGAGGGGTGCTGCCTGGCATAATTAGCAACTTCTCAACAAAGCTCAAGAAGATGACATTCGGAAGAAA TCAAATCCAAGGAAGCATTCCCGATGGCATTGGAAATCTCATAAGCTTGGATACTTTAGGTTTGGAGAGAAATCACTTGACTGGCAGCATACCAAATTCT ATTGGTAAATTACAAAATTTAGTTGAATTCGTTCTTAGTGAAAACAAATTATCAGGGAGCATCCCTTCTTCTTTAGGGAACATCACCTCGTTGATGCAAA TTAATTTTCATCAAAATAGTTTACAGGGAAGCATCCCTGCAAGCCTGGGAAACTGCAGGAACTTGTTGCTCTTGGGTCTCTCCCAAAACAATCTCAGTGG TCCCATACCAAAAGAGGTCCTTAGCATTTCATCCTTGTCAATGCGTTTGGGCTATCAGGGGAAATTCGAACATTTGTCTTTGGATGGGAACCTCTTCCAA GGCCCCATTTCCGAGTCTTTGAGATCTTTGAGAGCACTTCAAGATCTTAATCTCTCTCACAACAACTTGACTGGCCAAATTCCCAAGTTTTTGGGAGATT TCAAGTTGTTGCAGAGTTTGGATCTGTCATTTAATGACCTTGAAGGTGAGGTGCCTATGCATGGTGTTTTTGAGAATACAAGTGCGGTTTCGATTGCAGG GAACAAGAATCTTTGTGGAGGCATACTTCAGTTGAATCTGCCCACTTGCAGATCCAAGTCAACAAAGCCAAAGTCTTCTACCAAGCTGACATTGATAGTC GCTATTCCTTGTGGCTTTATTGGATTAATCTTCATCGCATCTTTTTTATTTTTGTGCTGCTTGAAAAAATCGTTGAGAAAAACAAAAAACGAGCTGTCAT GTGAAATGCCATTCCGTACAGTAGCTTACAAAGACCTCCTTCAAGCAACTAATGGATTCTCTTCGGGCAATTTAGTTGGTGCTGGTAGTTTTGGGTCTGT GTATAAAGGAGTACTTGCAGTTGATGGAGTGATTGTTGCTGTGAAAGTATTCAACTTGCTACGCGAAGGAGCTTCCAAAAGCTTCATGAGAGAATGTGCA GCCTTGCTAAACATCAGGCACCGGAATCTTGTCAAAGTATTATTTGCATGTGCTGGCGTTGATGTTTAA
AA sequence Show only first row Show all	>Potri.017G152080.1 pacid=42814219 polypeptide=Potri.017G152080.1.p locus=Potri.017G152080 ID=Potri.017G152080.1.v4.1 annot-version=v4.1 MPNLRVFSIQESGLGNDEDDDLSFLYTLSNSSKLEVLAIDGNNFGGVLPGIISNFSTKLKKMTFGRNQIQGSIPDGIGNLISLDTLGLERNHLTGSIPNS IGKLQNLVEFVLSENKLSGSIPSSLGNITSLMQINFHQNSLQGSIPASLGNCRNLLLLGLSQNNLSGPIPKEVLSISSLSMRLGYQGKFEHLSLDGNLFQ GPISESLRSLRALQDLNLSHNNLTGQIPKFLGDFKLLQSLDLSFNDLEGEVPMHGVFENTSAVSIAGNKNLCGGILQLNLPTCRSKSTKPKSSTKLTLIV AIPCGFIGLIFIASFLFLCCLKKSLRKTKNELSCEMPFRTVAYKDLLQATNGFSSGNLVGAGSFGSVYKGVLAVDGVIVAVKVFNLLREGASKSFMRECA ALLNIRHRNLVKVLFACAGVDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007600 [exp]	2.23	0.9691
AT3G61930			unknown protein		Potri.014G105000 [exp]	2.64	0.9645
AT1G64300			Protein kinase family protein ...		Potri.014G095200 [exp]	3.46	0.9674
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	3.46	0.9773
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011302 [exp]	4.89	0.9592
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.011G021400 [exp]	5.09	0.9464
AT5G51110			Transcriptional coactivator/pt...		Potri.012G112400 [exp]	5.19	0.9558
					Potri.004G140000 [exp]	6.92	0.9486
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	7.74	0.9511
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	11.48	0.9496

Compare expression of checked genes

Potri.017G152080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.