Plant FIBer expression Database

Potri.017G152460 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G152460.2 pacid=42813792 polypeptide=Potri.017G152460.2.p locus=Potri.017G152460 ID=Potri.017G152460.2.v4.1 annot-version=v4.1
ATGACAACGGAGGGGACTAATTTGTGTGGTGTACTGGTTCATGAGCAAACATTTAGTGAAAAACTCCGTGGTGTGCAGACGGGCAATCTTGGCTGGTCTG
TGGCCGTTGTTGTTGAGGAAAACCCAAGGGGAAGCAGACGCTACTGCTGGAGGTTTGGGCTTCAGTGGAAACCGGTCTGCGGTGAGCGGCTGGGGAAGAG
GAGTGGGCGCGAGAGACAGGGGCGGCTTGCGGCTATGTTGAAAAAAGATGAAGGCTTGGGTTTTTTTATTGGCCGAGGGGCAGTGTGTTTTTGCTGGCGA
GATGGGTGGTCTCTGGAAATGGTTTTGGGAGAGAACCCCGAGGAAGAGAGCCGTGGTTTTTTCAAAGGGAAGGGCGGCCGACTTGGTTTCAGAGGAAGAA
AAGATGAGCGGCCAGGTGCTGAGGTTTTTGGTTTCAAAGGGAGAGGGGCCGACCGGTCGTCTCTAGGAAATGGGGAGAAGATAGGGCTCTTGTTTTTTTC
AAAGGGCGGCCGGCGGCTCGCAAAGAAAGAAAAATATTTTAGGTTTAGGTTTTTTTTTTTTTTTGCTTGCTGCCCTTTCCCCTCTAAAACTTTTCTTTCC
CCGTGA
AA sequence
>Potri.017G152460.2 pacid=42813792 polypeptide=Potri.017G152460.2.p locus=Potri.017G152460 ID=Potri.017G152460.2.v4.1 annot-version=v4.1
MTTEGTNLCGVLVHEQTFSEKLRGVQTGNLGWSVAVVVEENPRGSRRYCWRFGLQWKPVCGERLGKRSGRERQGRLAAMLKKDEGLGFFIGRGAVCFCWR
DGWSLEMVLGENPEEESRGFFKGKGGRLGFRGRKDERPGAEVFGFKGRGADRSSLGNGEKIGLLFFSKGGRRLAKKEKYFRFRFFFFFACCPFPSKTFLS
P

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G152460
[exp]
0 1
Potri.005G126301
[exp]
1.00 0.9405
AT2G32840 proline-rich family protein (.... Potri.001G229800
[exp]
3.46 0.9153
Potri.001G374901
[exp]
3.46 0.9113
AT2G18510 EMB2444 embryo defective 2444, RNA-bin... Potri.007G028300
[exp]
6.63 0.8980
Potri.002G246900
[exp]
7.00 0.8953
AT2G32600 hydroxyproline-rich glycoprote... Potri.006G121300
[exp]
9.48 0.8881
AT3G61370 Protein of unknown function (D... Potri.016G069200
[exp]
9.48 0.8967
AT4G27540 PRA1.H prenylated RAB acceptor 1.H (.... Potri.001G396900
[exp]
12.00 0.8646
Potri.006G239650
[exp]
15.81 0.8862
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Potri.009G041600
[exp]
16.24 0.8915

Potri.017G152460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.