Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 753 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 704 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 684 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 682 / 0 EFR EF-TU receptor (.1) AT3G47110 677 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 432 / 2e-135 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 405 / 1e-123 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 394 / 1e-118 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 385 / 9e-117 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 381 / 4e-115 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G151400 [exp] 1610 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1537 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G069001 [exp] 1299 / 0 AT3G47570 676 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 1133 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 1108 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1093 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1085 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 1078 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 1063 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 813 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 809 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 805 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 800 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 797 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 795 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 795 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 795 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 789 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 784 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G152500.1 pacid=42814325 polypeptide=Potri.017G152500.1.p locus=Potri.017G152500 ID=Potri.017G152500.1.v4.1 annot-version=v4.1 ATGAGTTCATTCATATTGTGGTTTCTTTCCTTTCAAATAATTCAACACTCTTTCTCCTTCTCATTAGCTAGAGGAGGGAGCGAGATTGACAAACTCTCTC TACTATCTTTCAAGGCTCAAATTTCACACCCCCCTACAAAACTAAGCTCGTGGAATGAATCCTTACACTTCTGCCAGTGGTCAGGAGTAACATGTGGAAG ACAGGATCGAAGAGTCATAGAGCTTGACCTCCACTCCAGCCAACTGGTGGGCAGCCTATCTCCCTCCATTGGGAACTTGAGTTTTCTTAGCCTACTAAGC TTGGAAAACAACGGTTTCACCAATACTATCCCCCAAGAATTAGGTCGTTTGGTTCGGCTACAGGCACTGCTCCTTGGGAACAACTCGTTCAGTGGTGAAA TCCCGGCTAACATTTCTCATTGCTCGAACCTCCTGAAGCTTAATTTAGAGGGAAACAATCTTACCGGCAACCTTCCTGCCGGACTTGGATCGTTATCAAA GCTGCAGGTATTTAATTTTAGAAAGAACAATCTAGATGGCAAGATACCACTCTCTTTCGAAAATCTTTCATCTATCATTGAAATCGAAGGAAAAATGAAT TATTTGCAAGGGGGCATTCCCAATAGTATTGGGAAACTGAAAACATTGAATTTCTTTTCTCTCGGCTCAAATAATCTGAGTGGTACAATCCCTCCCTCCC TATACAATATTTCTTCTCTTATTCATTTCTCTCTGCCTCATAACCAATTTCATGGTACACTTCCTCCAAACATTGGCCTAACTCTTCCAAATCTGGAATT TCTTGGCATTCACGACAATCAATTAAGCGGACTAATTCCAGCAACGCTCTTAAATACCTCAAAATTTACTGAGATTTATCTTTCCTACAATGAATTCACC GGAAAAGTTCCCACTTTAGCTAGCATGCCTAACCTGAGGGTTTTTTCAATTCAAGAAAGTGGGCTTGGAAATGACGAGGATGATGATTTGTCGTTTCTCT ACACCCTCTCAAACAGCAGCAAGTTGGAAGTTTTGGCTATAGATGGGAACAATTTTGGAGGGGTGCTGCCTGACATAATTAGCAACTTCTCAACAAAGCT CAAGAAGATGACATTCGGAAGCAATCAAATCCAAGGAAGCATTCCCGATGGCATTGGAAATCTCATAAGCTTGGATACTTTAGGTTTGGAGAGAAATCAT TTGACAGGCAGCATACCAAATTCTATTGGTAAATTACAAAATTTAGTCGATCTCCTTCTTAGTGAAAACAGATTATCAGGGAGCATCCCTTCTTCTTTAG GGAACATCACCTCGTTGATGCAAATTAATTTTCATCAAAATAGTTTACAGGGAAGCATCCCTCCAAGCCTGGGAAACTGCACGAACTTGTTGCTCTTGGG TCTCTCCCAAAACCATCTCAGTGGTCCCATACCAAAAGAGGTCCTTAGCATTTCATCCTTGTCAAAGCGTTTGGGTCTGTCTGAAAATCAGCTGTCTGGT TCCCTTCCCTTTGAAGTTGGCAAGTTAAAGCATCTTGGATACATGGACATCTCCAAAAACAGGCTATCAGGGGAAATTCCCGCAAGTCTTGGCAGTTGCG AGAGTTTGGAACATTTGTCTTTGGATGGGAACTTCTTCCAAGGCCCCATTTCCGAGTCTTTGAGATCTTTGAGAGCACTTCAAGATCTTAATCTCTCTCA CAACAACTTGACTGGCCAAATTCCCAAGTTTTTGGGAGATTTCAAGTTGTTGCAGAGTTTGGATCTGTCATTTAATGACCTTGAAGGTGAGGTGCCCATG CACGGTGTTTTTGAGAATACAAGTGCGGTTTCGATTGCAGGGAACAAGAATCTTTGTGGAGGAATACTTCAGTTGAATCTGCCCACTTGCAGATCCAAGT CAACAAAGCCAAAGTCTTCTACCAAGCTGACATTGACAGTCGCTATTCCTTGTGGCTTTATTGGATTAATCTTCATCGCATCTTTTTTATTTTTGTGCTG CTTGAAAAAATCGTTGAGAAAAACAAAAAACGAGTTGTCATGTGAAATGCCATTCCGAACAGTAGCTTACAAAGACCTCCTTCAAGCAACTAATGGATTC TCTTCGGGCAATTTAGTTGGTGCTGGTAGTTTTGGGTCTGTGTACAAAGGAGTACTTGCATTTGATGGAGTGACTGTTGCTGTGAAAGTATTCAACTTGC TACGCGAAGGAGCTTCCAAAAGCTTCATGAGAGAATGTGCAGCCTTGCTAAACATCAGGCACCGGAATCTTGTCAAAGTATTATTTGCATGTGCTGGCGT TGATGTTCAAGGTAATGATTTCAAAGCTCTTGTTTATGAGTTCATGATCAATGGAAGTCTAGAAGAATGGTTGCATCCAATCCATACGTTGGACCTGGAA GTGCATCAGCCAAAAAATCTTAATCTCATTCAGAGGTTAAACATTGCAATTGATGTGGCTAATGCGCTCGACTATTTGCACAACCAATGCAAAATGCCTA TTGTTCATTGTGATCTTAAGCCAAGTAATGTTCTTCTCGATGGAGATATGACTGCTCATGTTGGGGACTTTGGATTGTTAAAGTTCCTTTCTGAAGCATC CTGTCAGTCATCTTCGAGTCAGACAAGCTCTGTTGGATTAAAAGGCACCGTCGGCTACGCAGCTCCTGAGTATGGCATCGGAAGCGAGGTGTCAACTTTC GGGGATGTACACAGCTATGGCATCCTACTGCTGGAGATGATTACTGGGAAGAGACCTACAGATAGCATGTTTAAAGATGGACTAGACCTTCACAGTTATG TTAAAATTGCATTACCTGACCGTGTAGTTGATATCGCGGACCCGAAACTTCTGACAGAAGTTGATCAGGGAAAAGGCACTGATCAAATCGTGGAGTGTTT GATTTCAATCAGCAAGATAGGAGTGTTTTGCTCAGAAAAGTTTCCTAAAGAGAGAATGGACATTAGCAATGTTGTAGCTGAATTGAATCGAACTAAGGCC AATTTTCTTGGAAGGTATAGACTGCTATCCTAG
AA sequence Show only first row Show all	>Potri.017G152500.1 pacid=42814325 polypeptide=Potri.017G152500.1.p locus=Potri.017G152500 ID=Potri.017G152500.1.v4.1 annot-version=v4.1 MSSFILWFLSFQIIQHSFSFSLARGGSEIDKLSLLSFKAQISHPPTKLSSWNESLHFCQWSGVTCGRQDRRVIELDLHSSQLVGSLSPSIGNLSFLSLLS LENNGFTNTIPQELGRLVRLQALLLGNNSFSGEIPANISHCSNLLKLNLEGNNLTGNLPAGLGSLSKLQVFNFRKNNLDGKIPLSFENLSSIIEIEGKMN YLQGGIPNSIGKLKTLNFFSLGSNNLSGTIPPSLYNISSLIHFSLPHNQFHGTLPPNIGLTLPNLEFLGIHDNQLSGLIPATLLNTSKFTEIYLSYNEFT GKVPTLASMPNLRVFSIQESGLGNDEDDDLSFLYTLSNSSKLEVLAIDGNNFGGVLPDIISNFSTKLKKMTFGSNQIQGSIPDGIGNLISLDTLGLERNH LTGSIPNSIGKLQNLVDLLLSENRLSGSIPSSLGNITSLMQINFHQNSLQGSIPPSLGNCTNLLLLGLSQNHLSGPIPKEVLSISSLSKRLGLSENQLSG SLPFEVGKLKHLGYMDISKNRLSGEIPASLGSCESLEHLSLDGNFFQGPISESLRSLRALQDLNLSHNNLTGQIPKFLGDFKLLQSLDLSFNDLEGEVPM HGVFENTSAVSIAGNKNLCGGILQLNLPTCRSKSTKPKSSTKLTLTVAIPCGFIGLIFIASFLFLCCLKKSLRKTKNELSCEMPFRTVAYKDLLQATNGF SSGNLVGAGSFGSVYKGVLAFDGVTVAVKVFNLLREGASKSFMRECAALLNIRHRNLVKVLFACAGVDVQGNDFKALVYEFMINGSLEEWLHPIHTLDLE VHQPKNLNLIQRLNIAIDVANALDYLHNQCKMPIVHCDLKPSNVLLDGDMTAHVGDFGLLKFLSEASCQSSSSQTSSVGLKGTVGYAAPEYGIGSEVSTF GDVHSYGILLLEMITGKRPTDSMFKDGLDLHSYVKIALPDRVVDIADPKLLTEVDQGKGTDQIVECLISISKIGVFCSEKFPKERMDISNVVAELNRTKA NFLGRYRLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	1.41	0.9823
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.013G075600 [exp]	2.00	0.9808
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	2.44	0.9746
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	3.16	0.9704
AT5G25840			Protein of unknown function (D...		Potri.018G045600 [exp]	5.65	0.9545
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Potri.009G010700 [exp]	6.24	0.9479	CNGC15.1
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	9.48	0.9462
					Potri.004G140000 [exp]	9.74	0.9437
					Potri.007G119100 [exp]	10.24	0.9416
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	10.95	0.9516

Compare expression of checked genes

Potri.017G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.