Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03610 94 / 1e-20 Protein of unknown function (DUF789) (.1) AT1G17830 93 / 5e-20 Protein of unknown function (DUF789) (.1) AT4G03420 89 / 6e-19 Protein of unknown function (DUF789) (.1) AT1G15030 90 / 8e-19 Protein of unknown function (DUF789) (.1) AT1G73210 86 / 7e-18 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT2G01260 83 / 1e-16 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT5G49220 83 / 2e-16 Protein of unknown function (DUF789) (.1) AT4G28150 73 / 1e-13 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT4G16100 71 / 3e-12 Protein of unknown function (DUF789) (.1) AT5G23380 69 / 5e-12 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068700 [exp] 1656 / 0 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.013G149400 [exp] 197 / 3e-52 AT1G15030 82 / 2e-16 Protein of unknown function (DUF789) (.1) Potri.019G119100 [exp] 176 / 3e-48 AT2G01260 84 / 1e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G151740 [exp] 127 / 1e-32 ND / Potri.013G144000 [exp] 94 / 2e-20 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 91 / 2e-19 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 87 / 1e-17 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G155200 [exp] 84 / 7e-17 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 81 / 1e-15 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017987 [exp] 346 / 6e-105 AT2G01260 77 / 1e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10041982 [exp] 342 / 3e-103 AT2G01260 79 / 2e-15 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10033747 [exp] 271 / 2e-78 AT1G15030 80 / 5e-16 Protein of unknown function (DUF789) (.1) Lus10031598 [exp] 226 / 7e-63 AT1G15030 63 / 2e-10 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 96 / 1e-19 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 89 / 3e-18 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 87 / 1e-17 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 85 / 6e-17 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 79 / 3e-15 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10036189 [exp] 77 / 3e-14 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [poplar] [flax] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Potri.017G152601.1 pacid=42814374 polypeptide=Potri.017G152601.1.p locus=Potri.017G152601 ID=Potri.017G152601.1.v4.1 annot-version=v4.1 ATGGATGGTTTGCAACTAGTTTCAATGCCACCTAGGAATGCATTCAGGGCTGATCGACCTAAAGCACGGAGAGGGCCTCAACCTGATGTACCTCATTCCA TTAAGCCATGCACCAGAGCGTTTCTTGAAACTGGTGCATGGCATCAGTCTCAAAATAAGGGTTCCAATAAAGCGACTAGATCAAATGAGCTCTCTGACTA TCCTGCATCCCAGAGTTCTGTCACTTGCCCTGATTTCTATTATTCAACCACAAAAGGATGTAATGCTCTTAGTTCATGTGAAGCTTGTATTGATAGTTCT AATGTAGACAAGTCTGCAAAGAAAAAATGCAAACCAAAAACCAGGAGGAGGGGAAAACAGAACAAGAGAGTTTCAAGTGATACTGGCTCAACTGAACCTG AAGTTTTATCTGAGTACGCTCAAGGAAGTTCAACCTCCAAAGGCTGTAGTTATAATGATTTTGGAGATGAACTAACATGCTCTGCAACTTCACCAGAAGT TTCACTCAGAGATGCTAGCAGTAACCATATTGATTTTGAAGGTGACACTAGATTTAGCAGTCCTGAAGCCCCAGCAATATGCATGTCAAACATTGATGAA GTGGCTATAGTGGAAACTTTTGAAGCATTGGATGTTTCATCGCCAGATGGTAGCAGTAGCCAGAATGATTTTGAGGTTGATTCTATAATTAGCACTTCGG AAGCATTGCCGATCTGCACATCCAACATTGTTGAGGTTGCTACAGTGGAGCCCATTATACCTTCTATAGCTCAGAATTTTCCTGGGGAGCATCAGATGAT TAATTTGGAAATCACTTTACAGACAAAAGGAGAGGGATTTTCCCTCTCTGACATTGGGGTGCAGTGCTCAAGTCAGACCAGCTGTTGCAATGATACACAA TCCAAAGATTTCTCATATGCTTCTGATTCCTCCCTGGTGTTTGATTATCTATCTATCGGCTCAAACAGTGATGATGGCACTAATGATAGTCATCATGTAA AAACATATCATGAAGGTAGCAGCAGAGGTAGTGTTTTAGAAGCACCAGGTTTCAATTCCAAAAAGGGGTCTTTATCTCATAAAAATTCATTAAATGGTGC TGTAGATACCTATCACCAAACTGAGGGCTCAAAGCACCGCGGTCAAAATTTTAGTTGCAGTGATGCACAATTGCTTATGTCAGGCAAAAAAGGCAAGCAA ATAAAAACATTGCCCAGGAGTAGTGCCAGTGCCCACAAATATGGAGGTTTTGAAAATTTGCATGGCCGGACAGGGAAGGAAAACAACCATTCTGTGTGGA AAAAAGTTCAGAGGAATGACACAGCAGATGAATGCAGCCCGAAAATGAAGATGTCTCATGCGTGCTTCCTGTCTGACTTGACTTTGAAAGAGGGTCCATC ACTTAAAGGGAACTGTACTCTCTCTGATGTAAATTCATCATCCAGAACTGAGGGAAAAAAACTGCCAAAAGACAAGGTTACTAAGAAGTTGAAACGAAAA AATAGTCCAGGTTCCAAACAAGAGTACAGTTCCAAACACGAGTACAGATGTCATGGTAGGGGCTATAGTTCCAACAAGGCCATCTTGAATGCACATGCAA AGACTGGCGTGCAACAGCATGAAATATTTGATCTCACAGCTCAAGTGAATGATAAAAAAGGAGGGAAATCTATTTCAAGAACTCATTCTCTGAATAGTTG TTTAACTGCTGGATTCCATCCCAGCAGAGTTGAATGCATGAATTCAGAATCAGTTAACAGCACACAAGTTTCCCCAGATGCATTACAGCCACTTCAAAGT ACTTGTGATACTGTTTCCAGCACAAGACAGTGCCATACAGAAAATGGAGGTAGCTTGCCAGCAAAGTTGTGCAACTCATTGGAGCAACATGCGGTTAAGG TGCCTCCAGTTTATCTTCCTCATCATTTTTTTAATAAAGTTCCCCAACTGGAAAAAGAAGTTACAGTTGCTGAGTACTGTAAGCAAAACCATAGTTCTGG AACAGTAATGCAGAAGTGGATACCCATTGGGGTAAAAGATCCTGAATTGACCACCTCTGCTAGATTTGGTAATTCATCACCTGATCCTTCTGATGGACCA GCTGGTGAAGATCTCACCTTGAGAAATGTTCAAGACAAAGCCAATTTTGATTCTCAAGACCTTGTTTCTTCATTGATGTTAGGCACGTGCCAGGATTCAG GAAATGCAGTTTGTTTTCCCCAAGAAGATGACCGCATTCAAAAGTTGAAGAACTCTACTCTTTGGATGGATGAGCTCAACAAGAAGCATGTAGCAGCTGA TGCTTTAACTAGCGAATCCTCTTATCAACAATTTTCAGCTTTTGAAGACGAATCAATAAAGATAATACAAGCTGTGAAGGATACTTGCAGGGTACAGATG GAATCTGAAGCTATTCAGATGGCCGCTGGTGGTCCAATTGCCGAGTTTGAAAGATTTCTTCATTTATCGTCTCCAGTTATTAATTTTCCCAGTTTATCAT GCTGCCAGACTTGTTTAGATGACCGGCTTGTTGGTGCATCACTATGCAGACATGAGATACCAAATATCCCATTGGGATGCATCTGGAAGTGGTATGAAGA ACATGGGAATTATGGTTTGGAAGTAAGGGCAGAAGAATGTGAGAATTCAAATAGCGGGAGCTTTGATCATTTTTCATTTCATGGCTATTTTGTTCCCTTT TTATCAGCAGTTCAATTGTTCAAAAACCATTCAAGTCAACCCATAAACAATAAGAACAGTGCTCCTGATCATGAAATTTCTGATACATATAAGGCTAGTG AATCATCAGAGAACTCTAATGTTGGTCGTCTTCCAATATTTTCTCTACTGATTCCTCAGCCTCGTACCACAGCTGTAGCTCAATCAGTTAACTTGACATG TTCTGATGGTGCAGAGTTACTCTTTGAATACTTTGAATCGGAACAACCTCAGCAAAGACGACCATTATATGAGAAGATACAAGAGCTTGCTAGAGGTGAT GCGTCTTCTCGTTACAAAATGTATGGGGACCCAACTAATTTGGCCTCTCTGAATCTCCATGACTTGCACCCCAGATCCTGGTACTCGGTGGCATGGTATC CTATATATAGGATACCAGATGGCCACTTTCGAGCTGCATTTTTGACTTACCATTCACTTGGCCATTTGGTTCATAAAAGTGCTGAAGTTGATTATGCGAG TAAGGATGCATGTATAGTTTCTCCAGTTGTGGGACTTCAGAGTTACAATGCTCAGGGTGAATGCTGGTTCCAGCTGCGGCACAGTGTAAACCAGGCAGCA GGAACACCAATTTCGAACCCTTCTGTAATTCTGAAGGAGCGGTTGAGAACCCTTGGGGAGACAGCATCTCTTATTGCCAGAGCTGTAGTAAACAAGGGAA ATCAGACATCCATAAACAGACATCCTGATTACGAGTTCTTTCTTTCTAGGGGACGATATTCACTTCCATAG
AA sequence Show only first row Show all	>Potri.017G152601.1 pacid=42814374 polypeptide=Potri.017G152601.1.p locus=Potri.017G152601 ID=Potri.017G152601.1.v4.1 annot-version=v4.1 MDGLQLVSMPPRNAFRADRPKARRGPQPDVPHSIKPCTRAFLETGAWHQSQNKGSNKATRSNELSDYPASQSSVTCPDFYYSTTKGCNALSSCEACIDSS NVDKSAKKKCKPKTRRRGKQNKRVSSDTGSTEPEVLSEYAQGSSTSKGCSYNDFGDELTCSATSPEVSLRDASSNHIDFEGDTRFSSPEAPAICMSNIDE VAIVETFEALDVSSPDGSSSQNDFEVDSIISTSEALPICTSNIVEVATVEPIIPSIAQNFPGEHQMINLEITLQTKGEGFSLSDIGVQCSSQTSCCNDTQ SKDFSYASDSSLVFDYLSIGSNSDDGTNDSHHVKTYHEGSSRGSVLEAPGFNSKKGSLSHKNSLNGAVDTYHQTEGSKHRGQNFSCSDAQLLMSGKKGKQ IKTLPRSSASAHKYGGFENLHGRTGKENNHSVWKKVQRNDTADECSPKMKMSHACFLSDLTLKEGPSLKGNCTLSDVNSSSRTEGKKLPKDKVTKKLKRK NSPGSKQEYSSKHEYRCHGRGYSSNKAILNAHAKTGVQQHEIFDLTAQVNDKKGGKSISRTHSLNSCLTAGFHPSRVECMNSESVNSTQVSPDALQPLQS TCDTVSSTRQCHTENGGSLPAKLCNSLEQHAVKVPPVYLPHHFFNKVPQLEKEVTVAEYCKQNHSSGTVMQKWIPIGVKDPELTTSARFGNSSPDPSDGP AGEDLTLRNVQDKANFDSQDLVSSLMLGTCQDSGNAVCFPQEDDRIQKLKNSTLWMDELNKKHVAADALTSESSYQQFSAFEDESIKIIQAVKDTCRVQM ESEAIQMAAGGPIAEFERFLHLSSPVINFPSLSCCQTCLDDRLVGASLCRHEIPNIPLGCIWKWYEEHGNYGLEVRAEECENSNSGSFDHFSFHGYFVPF LSAVQLFKNHSSQPINNKNSAPDHEISDTYKASESSENSNVGRLPIFSLLIPQPRTTAVAQSVNLTCSDGAELLFEYFESEQPQQRRPLYEKIQELARGD ASSRYKMYGDPTNLASLNLHDLHPRSWYSVAWYPIYRIPDGHFRAAFLTYHSLGHLVHKSAEVDYASKDACIVSPVVGLQSYNAQGECWFQLRHSVNQAA GTPISNPSVILKERLRTLGETASLIARAVVNKGNQTSINRHPDYEFFLSRGRYSLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	0	1
AT4G01020			helicase domain-containing pro...		Potri.017G050100 [exp]	1.73	0.9005
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	2.00	0.9003
AT2G33170			Leucine-rich repeat receptor-l...		Potri.003G174900 [exp]	3.74	0.8517
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	4.24	0.9058
AT3G04350			Plant protein of unknown funct...		Potri.013G048300 [exp]	5.83	0.8202
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	5.91	0.8812	RGA.64
AT1G11950			Transcription factor jumonji (...		Potri.011G009700 [exp]	6.00	0.8827
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	7.74	0.8222	Pt-MRE11.1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.002G059800 [exp]	10.39	0.8643
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.008G179500 [exp]	10.90	0.8452

Compare expression of checked genes

Potri.017G152601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.