Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14940 645 / 0 Major facilitator superfamily protein (.1) AT3G01350 616 / 0 Major facilitator superfamily protein (.1) AT1G72130 373 / 2e-123 Major facilitator superfamily protein (.1.2) AT1G22540 370 / 3e-122 Major facilitator superfamily protein (.1) AT1G72140 356 / 1e-116 Major facilitator superfamily protein (.1) AT1G72120 354 / 5e-116 Major facilitator superfamily protein (.1) AT1G72125 353 / 1e-115 Major facilitator superfamily protein (.1) AT1G22550 342 / 3e-111 Major facilitator superfamily protein (.1) AT3G54450 338 / 8e-110 Major facilitator superfamily protein (.1) AT1G22570 329 / 4e-106 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068500 [exp] 978 / 0 AT5G14940 631 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 376 / 2e-124 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 372 / 8e-123 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 365 / 5e-120 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 353 / 2e-115 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 350 / 4e-114 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 348 / 2e-113 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 342 / 3e-111 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 342 / 4e-111 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005603 [exp] 654 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10032177 [exp] 643 / 0 AT5G14940 597 / 0.0 Major facilitator superfamily protein (.1) Lus10014510 [exp] 640 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10039465 [exp] 535 / 0 AT5G14940 489 / 1e-168 Major facilitator superfamily protein (.1) Lus10016932 [exp] 397 / 8e-130 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 382 / 3e-126 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 357 / 6e-117 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 325 / 3e-104 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 322 / 8e-103 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 320 / 2e-102 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.017G152800.1 pacid=42813552 polypeptide=Potri.017G152800.1.p locus=Potri.017G152800 ID=Potri.017G152800.1.v4.1 annot-version=v4.1 ATGGCCAGTGGGCAGAAACCAAAAGGGCTCAACAAGTCATGTTTTCTCCTCATAGTGATAGCTGGTATGGAAAGGTTTGCATTCAAAGGGGTGGCATCAA ATTTGGTAACTTATCTTACAGATGTGGTTAAGATGAGCAACTCTGCTGCAGCCAAGACTGTTAATAATTGGTGTGGATTCACATCCATGTTACCACTTCT AGTTGCATCGCTTGCTGATTCATGGGATCGGTATTCCACCATTCTAACCTCTTCCTTTATTTATGTTGTGGGACTTGTGGCATTGACATCAACAGCATTG TCTTGGGCAAGGCATCCCACCAACAAAATAAGCTCCTCATACCTGTTTTGGTCGCTCTGTTTGATTTCTCTAGGACAAGGTGGATATAACCCATCTTTAC AAGCCTTTGGAGCAGATCAAATTGCGAACGATGATGAGCTGCCGAGCACAAAAGATGAGCAGAAATCAAATAAGAAGAGCTTATTCTTTCAGTGGTGGTA TTTTGGGGTTTGTGGTGGCAGCCTTGCAGGTGTCACAGTCATGTCCTATATCCAAGACACATTTGGCTGGGTACTCGGATTTGCAATTCCTACAATCGCA ATGGGAGCATCAATTTTACTGTTTTGGTGTGGAAGCAGAATTTATGCATACAAACAGGATGATGCCATCTCTGAGAGGCCTTCGCGGGACATAGTTCGAT CCATTAAGGAAGCTCTTTCGAAATTGATGAATAGCAGAATCACCTTACCAAACAACAATCCTGGAGTTGTTGAGCTGGAGCTTCAAGAAAAACCTCTTTG TCAGAATTCGGGCAATGCCAAGGGATTGAAGGAGGAACCCTGCAGTGGTATTAACTACCTAGTTGAAAATGGAAAAGTAGTATTAAGGCTTTTGCCGATA TGGACGATGCTGCTAATGTTTGCAGTCATCTTTCAGCAGCCTGCCACATTCTTCACCAAACAGGGAATGACAATGAAGAGGAATGTAGGCAGCAGCTTCA AGATCCCACCAGCTACACTACAAAGTGCTATTACAGTTTCTATAATCCTCCTGATGCCATTTTATGATGCGTTGCTGATCCCATTTACTCGACTGATTAC TCGCGACAAAAAGGGTATCAGTGTGACTCAAAGAATGGGTATCGGGATGGTACTGTCCATAATAGCCATGGTCATTGCTGCATTGGTTGAAACAAAAAGA CTCGAAATCAGCAGAAAAATGGAAGTTCTTGATCCAAAATTGGAAACAGAAGTTCCTTTAAGCATATTTTGGTTGCTGCCTCAGTACATTCTGCTTGGCA TCTCTGACATCTTCACTGTTGTTGGGATGCAAGAGTTTTTCTATAGTGAAGTTCCTGTAAGAATGAGAACAATGGGAATTGCACTATACACTAGTGTATT TGGGGTGGGAAGCTTCTTGAGTGCCCTGTTGATTTCACTAGTAGAATATTTCACAAGCTCAAGAGGCAAAGGGCGGAGCTGGTTCTCTGATGACATGAGA GAAGCCCGTTTCGACAAATACTATTGGCTTCTAGCCTTGTTAAGTGTACTCAGCTTAGTGTTTTATGTTATTTTCTGCAAATGTTTTGTAAGCAGAAGCA GTGATTTGGATAATGAGAACTAG
AA sequence Show only first row Show all	>Potri.017G152800.1 pacid=42813552 polypeptide=Potri.017G152800.1.p locus=Potri.017G152800 ID=Potri.017G152800.1.v4.1 annot-version=v4.1 MASGQKPKGLNKSCFLLIVIAGMERFAFKGVASNLVTYLTDVVKMSNSAAAKTVNNWCGFTSMLPLLVASLADSWDRYSTILTSSFIYVVGLVALTSTAL SWARHPTNKISSSYLFWSLCLISLGQGGYNPSLQAFGADQIANDDELPSTKDEQKSNKKSLFFQWWYFGVCGGSLAGVTVMSYIQDTFGWVLGFAIPTIA MGASILLFWCGSRIYAYKQDDAISERPSRDIVRSIKEALSKLMNSRITLPNNNPGVVELELQEKPLCQNSGNAKGLKEEPCSGINYLVENGKVVLRLLPI WTMLLMFAVIFQQPATFFTKQGMTMKRNVGSSFKIPPATLQSAITVSIILLMPFYDALLIPFTRLITRDKKGISVTQRMGIGMVLSIIAMVIAALVETKR LEISRKMEVLDPKLETEVPLSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGIALYTSVFGVGSFLSALLISLVEYFTSSRGKGRSWFSDDMR EARFDKYYWLLALLSVLSLVFYVIFCKCFVSRSSDLDNEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	0	1
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	1.00	0.8806
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	1.41	0.8578
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	3.00	0.8398	Pt-ATHK1.2
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G027700 [exp]	3.16	0.8107
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	3.46	0.8333	STGA1.3
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.002G018600 [exp]	10.39	0.7977	Pt-SSTP.2
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.014G130300 [exp]	10.72	0.7446
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.011G044100 [exp]	11.31	0.7841
AT2G37730			Protein of unknown function (D...		Potri.016G101200 [exp]	14.24	0.7871
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	14.69	0.7835

Compare expression of checked genes

Potri.017G152800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.