Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04750 341 / 1e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 342 / 2e-109 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 330 / 3e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 321 / 3e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 321 / 1e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 310 / 2e-99 MEF21 mitochondrial editing factor 21 (.1) AT5G59200 310 / 2e-99 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08305 310 / 3e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 311 / 1e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 307 / 9e-97 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 346 / 3e-112 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 340 / 8e-110 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 343 / 1e-109 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G053600 [exp] 340 / 1e-109 AT3G04750 759 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 342 / 2e-109 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 330 / 2e-105 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.005G011000 [exp] 332 / 6e-105 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G106500 [exp] 326 / 8e-105 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 327 / 2e-104 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 348 / 1e-111 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 347 / 2e-111 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 331 / 8e-108 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002288 [exp] 331 / 3e-106 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 327 / 1e-104 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009269 [exp] 325 / 1e-103 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 323 / 4e-103 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 320 / 5e-102 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 320 / 6e-102 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 320 / 7e-102 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.017G153700.2 pacid=42813894 polypeptide=Potri.017G153700.2.p locus=Potri.017G153700 ID=Potri.017G153700.2.v4.1 annot-version=v4.1 ATGAAGCGCCAGAGCTTAAAGCTTCTGCTGCAAAGTTGTGCAGATCTCGTTACTCTCAAGCAAATCCATGCCCAAGCTCTCACTCAAGGATTACTCTTCA TTGAGCAACCCTTAGCCTGCAAATTAGTTAATAGCTATGCTAAATCGGGTAATCCACATGATGCACAGAAGGTGTTTGGTTATATTCAAGACCCCGATAG AGTAACTTATACTTCTCTAATCAATCTTTACTTGAGCACTCAACTTCCAATCAAAGCCTTTTCAGTTTTTTCAAAGCTGGTAAATGAGGGTTTAAGGCCT GACAGCCATTCAGTTGTTGGTGCATTATCAGCTTGTGGAAAAAAACAAGATTCGCTAAATGGGAAGCTAGTGCATGGGATGATCTTTAGATTTCAGTTGG GGGCGAATTCGATTGTTGGTAATGCTTTGATTGATATGTATTGCAGAAATGGTGAAATTAAGATAGCCCAGTTGGTGTTTAAGCAAATGGGTATCAAAGA TATGTCTTCTTGGACCAGTTTGCTTAATGGGTTTGTAATGTGCAATGGTTTAGAGTCAGCTAGGCGTGTGTTTGATGAAATGCCATGGAGGAATGACGTT GCTTGGACTGCGATGATAACAGGTTATGTTCGAGGAGGAATGCCAATTCGGGGTCTTGAAATGTTTAAGCAAATGAAAGCTGAAGGGGAAAACCAGCCTA CGGTTATCACGGCAGTGGCTGTTCTCTCGGGTTGTGCTGATCTTGGGGCTCATGATCATGGTCAAGCTGTTCATGGTTATATCAGCAAAGTTAATCTCGA TAAGGGTGTTACTGTGAGCAATGCTTTAATGGATATGTACTCAAAGGGTGGGTGCGTTGAGTCTGCTATGAAGATATTCGATAGATTGGTGAAAAAAGAT GTGTTTTCATGGACTACAATGATATCAGCGCACTCATCTCATGGTAAAGGAAACCATGCCCTTGAAGTTTTCTATGACATGTTGGAATCTGGGGTCATCC CAAATGATGTTACATTTCTGTTGGTTCTATCAGGTTGCAGCCATTCAGGATTGCTTGTCGAGGCAAATAAATTGTTTAACGGAATGATCCAATGTTACGG TTTTGAACCCAAGATTGAGCATTACGGATGCATGGTAGACCTTCTTTGTCGAGCAGGGCTTTTGGAAGAGGCAAAAGAGTTGATTGATAATATGCCTATG GACCCAGATGCTGTTATCTGGCGATCCTTGCTTAGCGCTTGTATGAACCAGAGGAACTTGGGCTTGGCTGAAATTGCAGGAAAGAAGATAATTGAATTGG AACCGCATGATGATGGAGTGTATGTGCTCCTCTCCAACATCTATCATGTAGCAAATAGGATGAAGGACGCACGGAAGATGAGGAAAATGATGGGTGATCA AAAAGTCATGAAAAAACCAGCATGTAGTTACATTGAGTTAAATGGTGTTGTTCATCAATTTCATACAGAAAATGCAACTCATCATGCTTCCACAAAAATT TACATGTTGCTAGAAATGATCAATGAGCATTTGAGATTGGATACGGATTACTCTTTGTTGGAAATGGACTTGGTATATGACGGGCTGCTTTGA
AA sequence Show only first row Show all	>Potri.017G153700.2 pacid=42813894 polypeptide=Potri.017G153700.2.p locus=Potri.017G153700 ID=Potri.017G153700.2.v4.1 annot-version=v4.1 MKRQSLKLLLQSCADLVTLKQIHAQALTQGLLFIEQPLACKLVNSYAKSGNPHDAQKVFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKLVNEGLRP DSHSVVGALSACGKKQDSLNGKLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDMSSWTSLLNGFVMCNGLESARRVFDEMPWRNDV AWTAMITGYVRGGMPIRGLEMFKQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVHGYISKVNLDKGVTVSNALMDMYSKGGCVESAMKIFDRLVKKD VFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLCRAGLLEEAKELIDNMPM DPDAVIWRSLLSACMNQRNLGLAEIAGKKIIELEPHDDGVYVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPACSYIELNGVVHQFHTENATHHASTKI YMLLEMINEHLRLDTDYSLLEMDLVYDGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.017G153700 [exp]	0	1
AT1G01290		CNX3	cofactor of nitrate reductase ...		Potri.014G099500 [exp]	6.24	0.7604
AT5G39960			GTP binding;GTP binding (.1)		Potri.004G230600 [exp]	10.90	0.7965
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	15.87	0.7937
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.005G053600 [exp]	19.20	0.7810
AT5G14590			Isocitrate/isopropylmalate deh...		Potri.001G347800 [exp]	20.24	0.7788
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.003G155600 [exp]	38.88	0.7691
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.003G087100 [exp]	45.82	0.7604
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	47.25	0.7638
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	67.74	0.7468
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Potri.003G123200 [exp]	77.94	0.7295

Compare expression of checked genes

Potri.017G153700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.