Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73320 346 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G08125 118 / 3e-31 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G44170 56 / 6e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G49560 50 / 5e-07 Putative methyltransferase family protein (.1) AT5G27410 44 / 0.0001 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G27400 43 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G26200 41 / 0.0006 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006800 [exp] 108 / 2e-27 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.017G017000 [exp] 76 / 2e-16 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G148200 [exp] 64 / 5e-12 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G025600 [exp] 49 / 8e-07 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.006G225600 [exp] 45 / 5e-05 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G031700 [exp] 42 / 0.0003 AT2G43320 527 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G039000 [exp] 42 / 0.0004 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G127300 [exp] 40 / 0.0008 AT2G43320 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031894 [exp] 379 / 2e-133 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021425 [exp] 109 / 5e-28 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10015166 [exp] 54 / 3e-08 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031516 [exp] 50 / 5e-07 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016141 [exp] 47 / 5e-06 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10018640 [exp] 46 / 1e-05 AT5G44170 348 / 1e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023222 [exp] 40 / 0.001 AT4G14000 335 / 3e-116 Putative methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.017G153900.2 pacid=42813199 polypeptide=Potri.017G153900.2.p locus=Potri.017G153900 ID=Potri.017G153900.2.v4.1 annot-version=v4.1 ATGGCTAGTAGTACTGTTGCTGAATCAGAAATGGAAGAAGAAATAAAATTGGGATCTTATGGTGGAAAGGTGAGGGTGCTAAGACAAGATGAAGAATCAG CTGCTGCGGAAACCATGCTCTTGTGGGGTATCCAACAGCCCACTTTTTCAAAACCAAACTCTTTTGTCTCCCAATCTTCTCTCCAACTCAATCTTGATGC TTGTGGTCATTATCTCTCCATCCTCCAGTCTCCTTCTTCATTGAGCACACCTGGAGTCACTGGTTCGGTCATGTGGGACAGTGGTGTTGTGTTGGGGAAG TTCTTGGAACATGCTGTCGACTCTGGCCTGCTTCTTCTTCATGGCAAGAAGGTTGTTGAGTTGGGCTCTGGCTGTGGATTGGTAGGCTGCATTGCAGCTC TCTTGGGTGCTCAAGTAACACTCACTGATCTGCCTGATAGACTGAGGTTACTGAAAAAGAATATCGAAACAAATCTGAGGCATGGAAACGTGCGGGGCTC TGCAGTTGTTAGGGAACTCATATGGGGAGATGACCCAGATCAGGATTTGATTGTTCCTTTTCCTGATTACGTCCTTGGATCGGATGTGGTCTATAGTGAA GGTGCTGTGGTAGATTTGTTGGACACATTGGTGCAACTCTGTGGAGCCCAAACAACTATATTTTTGGCCGGAGAACTTCGGAATGATGCTGTCCTCGAGT ATTTCCTTGATGCTGCGATGAAGGAATTTGTTGTTGGGCGTGTGGAGCAGACACGGTGGCATCCAGAATATTGCAGCCCCAGAGTAGCTATGTATGTTCT GGTGAAGAAGTGA
AA sequence Show only first row Show all	>Potri.017G153900.2 pacid=42813199 polypeptide=Potri.017G153900.2.p locus=Potri.017G153900 ID=Potri.017G153900.2.v4.1 annot-version=v4.1 MASSTVAESEMEEEIKLGSYGGKVRVLRQDEESAAAETMLLWGIQQPTFSKPNSFVSQSSLQLNLDACGHYLSILQSPSSLSTPGVTGSVMWDSGVVLGK FLEHAVDSGLLLLHGKKVVELGSGCGLVGCIAALLGAQVTLTDLPDRLRLLKKNIETNLRHGNVRGSAVVRELIWGDDPDQDLIVPFPDYVLGSDVVYSE GAVVDLLDTLVQLCGAQTTIFLAGELRNDAVLEYFLDAAMKEFVVGRVEQTRWHPEYCSPRVAMYVLVKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	0	1
AT3G22480		PDF2	prefoldin 2 (.1.2)		Potri.001G240200 [exp]	1.00	0.8974
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	3.00	0.8755	CLC.3
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	4.00	0.8712
AT3G57320			unknown protein		Potri.006G046800 [exp]	5.56	0.8036
AT1G02960			unknown protein		Potri.002G208058 [exp]	5.74	0.8417
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	7.07	0.8078
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.005G087100 [exp]	7.93	0.8477
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.014G129900 [exp]	8.48	0.7780
AT5G14530			Transducin/WD40 repeat-like su...		Potri.017G071900 [exp]	9.53	0.7633
AT5G63220			unknown protein		Potri.008G044100 [exp]	10.95	0.8450

Compare expression of checked genes

Potri.017G153900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.