Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73390 563 / 0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 533 / 0 Endosomal targeting BRO1-like domain-containing protein (.1) AT5G14020 226 / 2e-70 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067400 [exp] 640 / 0 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G062000 [exp] 262 / 3e-84 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 245 / 1e-77 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031881 [exp] 593 / 0 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10042289 [exp] 588 / 0 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031313 [exp] 580 / 0 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10026368 [exp] 516 / 0 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10041527 [exp] 271 / 7e-88 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10012563 [exp] 269 / 5e-87 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035167 [exp] 254 / 5e-81 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031997 [exp] 252 / 2e-80 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G154200.8 pacid=42813077 polypeptide=Potri.017G154200.8.p locus=Potri.017G154200 ID=Potri.017G154200.8.v4.1 annot-version=v4.1 ATGGAACGCCTATCTGCTTTGAGAACTCGTGTTGTTGTTATGGCTGGCCAAGAAGCACCAACAGTTTCAAGAACAAGGAGAAAAAGTGCTACACAACATG GAGGTTCAACATTGGCCGATCTTCACCAGGCTCTTCAAGACTACTTGCCTGTTCTGTTGGGATTGTTTAAAGATGGAAGCCAGCTACAACACAACGTGCA ATTTGCGTGGATGAATCAAGAAGATGAAGCAGAGGAAACAGCCATTTCTAATGCATGGTATGAGGTGTTGTCAGTTTTGCATTTGATGGCGATGCTATCA TTATCACAGGCCAACTTGTTACTTCTTCCAAGAACATCTTGTGATGGTTATCAGCCAAAAGTATCGGAAGAGAATAGGCGAGCATCAGTTGATATTTTCT TGAAGGCTGCAGGGTATCTGGATTGTGCTGTTCGGCATGTGCTTCCACAATTTCCTACTTCACTAAGGGAAGATTTACCAGTGGACCTTGCAGAAGGTGT TCTTAGAGCACTTTGCCTTCAAGCATTGGGACAGGGTGTTGATATCCAATTAGGAATGGCAATCGATAGTGCCAAAGCTACTCTTGCAGTGAAGCGAAGG CTTGCTTGTGAGATGGTAAAGTACTGGCAGCAGGCTCAAGATAATATAATGAACCTTCCATTAGCAAATGGTTGGGGGGAAAAGCACCGGCTCTTCATAA AGTGGAAATATGTGGAGGCAAAGGCTGCAGCATACTATTATCATGGTTTAATCCTTGATGAAGGGAACACAGAAAAGTCTCATGGGATGGCTGTAGCTGC TTTGCAAGCTGCAGATGAGTATTTTAAAGAAAGTAAACGATCATGTGAGGCATTCAATGCAGCTTCTCCTTTGTCAAGAAACCCACCGCTTTGGGGAACC ATGAAGTACCTCTCTGAGAAAATTCCAAAAGATACTTCTAGCAAGGTGCGGATAAACCGTGATCTATATTCCCATGAAAAAATCATGGAGACAGCACCAA CATTGCCTGATTTTTCTTTGGCACTGAAACCTGATGAATTTCAGCTCCCTCCTGTGGTCCCGTCCTGGAATGAGGATAATGTTGGTGGTGGACAAGCCAG TTCGAACCACCTGAAGGGTGAGCGAAGATAG
AA sequence Show only first row Show all	>Potri.017G154200.8 pacid=42813077 polypeptide=Potri.017G154200.8.p locus=Potri.017G154200 ID=Potri.017G154200.8.v4.1 annot-version=v4.1 MERLSALRTRVVVMAGQEAPTVSRTRRKSATQHGGSTLADLHQALQDYLPVLLGLFKDGSQLQHNVQFAWMNQEDEAEETAISNAWYEVLSVLHLMAMLS LSQANLLLLPRTSCDGYQPKVSEENRRASVDIFLKAAGYLDCAVRHVLPQFPTSLREDLPVDLAEGVLRALCLQALGQGVDIQLGMAIDSAKATLAVKRR LACEMVKYWQQAQDNIMNLPLANGWGEKHRLFIKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADEYFKESKRSCEAFNAASPLSRNPPLWGT MKYLSEKIPKDTSSKVRINRDLYSHEKIMETAPTLPDFSLALKPDEFQLPPVVPSWNEDNVGGGQASSNHLKGERR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73390			Endosomal targeting BRO1-like ...		Potri.017G154200 [exp]	0	1
AT5G52990			SNARE-like superfamily protein...		Potri.015G012300 [exp]	9.79	0.5967
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.018G065200 [exp]	38.49	0.6020
AT2G14255			Ankyrin repeat family protein ...		Potri.009G029800 [exp]	119.05	0.5723
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.012G138600 [exp]	119.84	0.5687
AT5G66150			Glycosyl hydrolase family 38 p...		Potri.007G056300 [exp]	128.17	0.5774
AT1G33490			unknown protein		Potri.003G048300 [exp]	128.18	0.5286
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Potri.014G111700 [exp]	128.95	0.5749	Pt-IAA4.2
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116700 [exp]	163.56	0.5337
AT3G15650			alpha/beta-Hydrolases superfam...		Potri.001G173700 [exp]	173.95	0.4970
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	176.50	0.5098

Compare expression of checked genes

Potri.017G154200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.