Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73340 714 / 0 Cytochrome P450 superfamily protein (.1) AT3G50660 323 / 2e-105 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 296 / 2e-95 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 290 / 8e-93 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G36380 284 / 6e-90 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G30180 259 / 4e-81 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 254 / 3e-79 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G12740 252 / 3e-78 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G14400 221 / 1e-67 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT5G45340 217 / 5e-65 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026500 [exp] 325 / 4e-106 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 322 / 6e-105 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.008G067500 [exp] 313 / 1e-101 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 306 / 5e-99 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 301 / 5e-97 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.014G171700 [exp] 298 / 5e-96 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.003G038200 [exp] 293 / 5e-94 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 283 / 6e-90 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 277 / 6e-88 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031295 [exp] 681 / 0 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10031866 [exp] 671 / 0 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 289 / 2e-92 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 289 / 4e-92 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10016065 [exp] 287 / 3e-91 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10024016 [exp] 268 / 1e-84 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 264 / 2e-82 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 262 / 9e-82 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10034377 [exp] 258 / 6e-81 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10042788 [exp] 259 / 1e-80 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.017G154600.3 pacid=42814131 polypeptide=Potri.017G154600.3.p locus=Potri.017G154600 ID=Potri.017G154600.3.v4.1 annot-version=v4.1 ATGAGAGAAATTTATTCGGCAACACTTATGATCTCGTCCATCTTATTCATCGTTTTTCTTGTACAATTGCTTGTATGCAAGAAGAAGAGCAAGGAAAAGA CATCGTACAAATTGCCACCAGGTAGAAGAGGCTGGCCATTGATTGGTGATAGCTTCAACTGGTTCAATGCTGTTGCTGGTTCTCATCCCCCTCAATTTGT TCACCAACAAGTCAATAGGTTTGGTAAGATATTCTCATGCAGTTTGTTCGGAAAATGGGCTGTGGTATCAGCAGACCCGACCTTTAACCGGTTTATAATG CAAAATGAAGGCAAATTGTTTCAATCAAGTTATCCAAAATCTTTTAGAGATTTGGTTGGGAAAAATGGGGTGATCACAGTCCACGGAGAGCAACAACGAA AACTTCATGGAATTGCATCTAATATGATGCGTCTAGAGAAGCTCAAGTTCCATTTCTTGGATAATATTCAATTGATTATGCTTCAAACTTTGAACAAACT TGACAACAACCAAGTCATTCTTCTCCAAGATGTTTGCAGAAAGGTAGCTATTAATCTGATGGTGAATCAACTACTTGGGGCATCAAGTGAGACAGAAATT AACGAGATGGCTCACTTCTTCTCTGACTTTGTCGATGGTTGTCTATCTCTTCCCATAAATATTCCTGGTTTTGCCTACCACACTGCCATGAAGGCAAGGG AGAAAATTATAAGAAAGATAAACAAGACAATAGAGAAGCACGGGCAAGAAGAGTCATCAGAAGGTAGTAATGGGGTGCTTGGAAGGCTTTTAGAGGAAGA AAGTTTGCCTGATAATGCAGTAGCAGACTTTATTATCAATCTCCTTTTTGCTGGGAATGAAACAACAGCTAAAACCATGCTTTTTGCTGTTTATTTCCTC ACTCGGTGTCCAAAAGCAATGCAGCAACTACTGGATGAACAAGATAGTATAAGGAGTAATTCTAGTGGAGAGGGAATGCTAACATGGCAAGATTACAAAG CAATGTCTTTTACTCAGTGTGTTATTGATGAAACGCTTCGACTCGGGGGGATTGCAATATGGCTAATGAGGGAGGCCAAGCAAGATGTGGTATACCAAGA TTATGTAATTCCGAAAGGGTGCTTTGTGGTTCCATTTCTTTCAGCGGTTCACTTGGATGAAAATTTGTACAAGGGAGCTAGCACCTTCAATCCTTGGAGA TGGATGGAGCCTGAAAATCAAGAAAAGAGAAATTGGAGAAGTAGCCCATTCTACTGTCCCTTTGGAGGAGGTGCTCGGTTTTGTCCAGGAGCAGAGTTGT CTCGTCTCCAAATTGCTATCTTTCTTCACTACTTTGTTACTACATTTACATGGACGCAGCTCAAGGAAGACAGGATGTCCTTCTTTCCATCAGCTCGCTT GGTTAATGGTTTCCAAATTCGTTTGACAAGCCGCCATCATCTCGACTCAGAATCGTTGTAA
AA sequence Show only first row Show all	>Potri.017G154600.3 pacid=42814131 polypeptide=Potri.017G154600.3.p locus=Potri.017G154600 ID=Potri.017G154600.3.v4.1 annot-version=v4.1 MREIYSATLMISSILFIVFLVQLLVCKKKSKEKTSYKLPPGRRGWPLIGDSFNWFNAVAGSHPPQFVHQQVNRFGKIFSCSLFGKWAVVSADPTFNRFIM QNEGKLFQSSYPKSFRDLVGKNGVITVHGEQQRKLHGIASNMMRLEKLKFHFLDNIQLIMLQTLNKLDNNQVILLQDVCRKVAINLMVNQLLGASSETEI NEMAHFFSDFVDGCLSLPINIPGFAYHTAMKAREKIIRKINKTIEKHGQEESSEGSNGVLGRLLEEESLPDNAVADFIINLLFAGNETTAKTMLFAVYFL TRCPKAMQQLLDEQDSIRSNSSGEGMLTWQDYKAMSFTQCVIDETLRLGGIAIWLMREAKQDVVYQDYVIPKGCFVVPFLSAVHLDENLYKGASTFNPWR WMEPENQEKRNWRSSPFYCPFGGGARFCPGAELSRLQIAIFLHYFVTTFTWTQLKEDRMSFFPSARLVNGFQIRLTSRHHLDSESL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73340			Cytochrome P450 superfamily pr...		Potri.017G154600 [exp]	0	1
AT4G10390			Protein kinase superfamily pro...		Potri.011G147100 [exp]	2.64	0.8850
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Potri.001G233100 [exp]	3.16	0.7773
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079200 [exp]	4.89	0.8085
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.006G010500 [exp]	13.52	0.8167	Pt-GDI1.1
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	14.42	0.7296
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	14.69	0.8311
					Potri.005G151601 [exp]	14.73	0.6745
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	15.32	0.8101
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	15.74	0.8155	ALDH1.2
AT4G24780			Pectin lyase-like superfamily ...		Potri.001G339500 [exp]	26.26	0.7667

Compare expression of checked genes

Potri.017G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.