Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 309 / 2e-96 RKL1 receptor-like kinase 1 (.1) AT3G02880 299 / 7e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 291 / 8e-90 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G58300 291 / 1e-89 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 288 / 1e-88 Leucine-rich repeat protein kinase family protein (.1.2) AT3G17840 286 / 1e-87 RLK902 receptor-like kinase 902 (.1) AT5G05160 279 / 3e-85 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G35390 278 / 1e-84 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 278 / 2e-84 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 269 / 3e-81 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066300 [exp] 948 / 0 AT3G02880 301 / 4e-94 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 323 / 7e-102 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 318 / 1e-99 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 315 / 8e-99 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 313 / 3e-98 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G279300 [exp] 296 / 2e-91 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 290 / 3e-89 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 290 / 1e-88 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G117200 [exp] 289 / 2e-88 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040653 [exp] 613 / 0 AT1G68400 331 / 5e-105 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018255 [exp] 456 / 2e-157 AT2G36570 271 / 4e-85 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 326 / 9e-103 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 323 / 8e-102 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 318 / 2e-100 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10034446 [exp] 315 / 8e-99 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 315 / 1e-98 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 312 / 1e-97 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10010973 [exp] 293 / 7e-91 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10027568 [exp] 278 / 9e-85 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G154700.1 pacid=42813688 polypeptide=Potri.017G154700.1.p locus=Potri.017G154700 ID=Potri.017G154700.1.v4.1 annot-version=v4.1 ATGGATTTAGCTGTTAGCAACATATTTGTTGTAACGACATTTGTTGTCTTCAATTTGATCTTTGGCTTGTCAAGCACCATGCCTGTTCATTCCTTGTATC AAACCAAGGTGTTCTTTCCTGAAGAAAGAGATGCATTGATGCAGATACGAGATTCTGTCAGTTCTACGTTAGATTTGCATGGAAATTGGACTGGACCGCC TTGTAACCAAAATTCGGGCAGATGGGCAGGCATTATCTGTTCAAATTGGCATGTGGTTGGCCTTGTGCTTGAAGGAATCCAGCTCACAGGTTCTCTCCCA CCTACATTTTTACAGAACATTACTTTCTTGGCTTATCTTAGTTTCAGAAACAACTCAATCTATGGACCTCTTCCTAATCTCAGCAATCTTGTGCTTTTGG AATCTGTCTTTTTTTCATACAACCGCTTCACTGGTCCAATTCCATCCGAGTACATTGAATTGCCAAACTTGGAACAATTGGAGTTGCAACAGAATTATTT AGATTGGGAGATACCACCTTTTGATCAACCGACATTGACCCTTTTCAATGTGTCCTATAATCATCTTCAAGGCTCCATTCCTGATACTGATGTCCTTCAG AGGTTCTCAGAGAGCTCCTATGATCATAACTCAAATCTCTGTGGAATTCCGTTGGAACCATGCCCAGTTCTGCCTCTTGCTCAGCTTATACCGCCTCCAT CTCCTCCCATAAGTCCACCGCAGAGCAAGAAAAGGAAGCTTCCAATTTGGATCGTTGTTTTGGTTGCGGTTGTATCAACCCTTGTTGCATTGATGGTCAT GTTTGTTTTCTTGTGTTGTTATAAGAAGGCACAAGAAAAGGAAACACCAAAAGAACATCAGGCAGGGGAAGATGGTTCTTCAGAGTGGACAGACAAAAAA ACGGCGTATTCCCGAAGTGCTGAGGATCCTGAAAGAAGCGTAGAGTTACAATTTTTTGACAAGAATATACCTGTTTTTGACTTAGATGATTTACTAAGGG CATCTGCGGAAGTGTTAGGAAAGGGGAAACTTAGCACCACATACAAAGCAAACCTGGAATCAGGTGCTGTCATTTCCGTTAAGAGAGTAGAGTACATGGA CAGCTTGAGCAAGAAGGAATTTATTCAGCAGATGCAGCTTCTGGGAAAGATGAGGCATGAAAACCTTGTGCAGATAATCTCCTTTTACTATTCCAAGGAG GAAAAGCTGATTGTCTATGAGTTCGTACCTGGTGGAAGTTTATTTGAGCTGTTGCATGAGAATAGAGGAGTTGGAAGAATCCCTCTGAACTGGGCTGCAA GATTTTCGATAATCAAAGACATAGCCAAGGGTATGGCTTTCCTTCACCAGTCCTTACCTTCTCACAAGGTCCCACATGCCAACCTCAAATCATCTAATGT ACTAATCCGCAGAGATCGCCTCAGCTACCACACTAAGCTGACAAACTATGGCTTCTTGCCTCTGCTGCCTTCTCGGAAATTATCCGAAAGGCTAGCTGTT GGCAGGTCACCGGAATTCTGTCAAGGAAAGAAGCTAACACACAAAGCTGATGTATACTGTTTTGGCATTATCCTATTAGAAGTCATAACAGGGAAGATTC CAGGAGGGACTTCACCAGAAGGAAACTATGAAAAAGCAGATGATCTTTCTGATTGGGTTAGAATGGTAGTGAATAATGATTGGTCAACAGACATATTAGA TGTAGAGATCTTGGCTTCAAGAGAGGGGCATAATGAGATGATGAAGCTGACAGAGATAGCTCTGCAGTGTACAGATATGGCACCAGAAAAACGGCCTAAG ATGAGTGAAGTATTGATAAGGATAGAGGAGATTGATAGAACAAACCGAGGAAATGACTAG
AA sequence Show only first row Show all	>Potri.017G154700.1 pacid=42813688 polypeptide=Potri.017G154700.1.p locus=Potri.017G154700 ID=Potri.017G154700.1.v4.1 annot-version=v4.1 MDLAVSNIFVVTTFVVFNLIFGLSSTMPVHSLYQTKVFFPEERDALMQIRDSVSSTLDLHGNWTGPPCNQNSGRWAGIICSNWHVVGLVLEGIQLTGSLP PTFLQNITFLAYLSFRNNSIYGPLPNLSNLVLLESVFFSYNRFTGPIPSEYIELPNLEQLELQQNYLDWEIPPFDQPTLTLFNVSYNHLQGSIPDTDVLQ RFSESSYDHNSNLCGIPLEPCPVLPLAQLIPPPSPPISPPQSKKRKLPIWIVVLVAVVSTLVALMVMFVFLCCYKKAQEKETPKEHQAGEDGSSEWTDKK TAYSRSAEDPERSVELQFFDKNIPVFDLDDLLRASAEVLGKGKLSTTYKANLESGAVISVKRVEYMDSLSKKEFIQQMQLLGKMRHENLVQIISFYYSKE EKLIVYEFVPGGSLFELLHENRGVGRIPLNWAARFSIIKDIAKGMAFLHQSLPSHKVPHANLKSSNVLIRRDRLSYHTKLTNYGFLPLLPSRKLSERLAV GRSPEFCQGKKLTHKADVYCFGIILLEVITGKIPGGTSPEGNYEKADDLSDWVRMVVNNDWSTDILDVEILASREGHNEMMKLTEIALQCTDMAPEKRPK MSEVLIRIEEIDRTNRGND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.017G154700 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.007G007400 [exp]	29.52	0.6861
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.005G130700 [exp]	44.15	0.6578
					Potri.010G210400 [exp]	48.06	0.6564
AT5G18260			RING/U-box superfamily protein...		Potri.019G032300 [exp]	49.49	0.6725
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	63.82	0.6655	AGO913
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	66.09	0.6700
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	99.94	0.6467
AT3G16060			ATP binding microtubule motor ...		Potri.018G079800 [exp]	100.39	0.6534
AT3G50780			unknown protein		Potri.007G032800 [exp]	124.27	0.6446
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.001G282600 [exp]	132.06	0.6006

Compare expression of checked genes

Potri.017G154700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.