Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17820 692 / 0 Putative integral membrane protein conserved region (DUF2404) (.1) AT1G73200 637 / 0 Putative integral membrane protein conserved region (DUF2404) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152400 [exp] 1197 / 0 AT1G17820 686 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038326 [exp] 800 / 0 AT1G17820 705 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10040647 [exp] 788 / 0 AT1G17820 709 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10036188 [exp] 768 / 0 AT1G17820 687 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10018266 [exp] 723 / 0 AT1G17820 696 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G155000.1 pacid=42814180 polypeptide=Potri.017G155000.1.p locus=Potri.017G155000 ID=Potri.017G155000.1.v4.1 annot-version=v4.1 ATGTGGCCCGTGGTAGTAATATTTGCTGGAGGCTTTCTTTCTGGCCTGCTCACTCTTGTTGCTTTACAAGCTCTGGGTGTTTATGTTTTGATTAAAAGAT TGAATCGAAAGACTCAACAACAACAAGCATCACATTCTTCTTCTTCTTCTCCACATCATCAAGACCTCGATCCCCAACAGTCCCTTGATTATGCCCATAA CAAGAAGGGATATGTCTGGGTTCTTGATTCAGATCAGGTTCTGAAAAATTGGCCAGTGGAAAAAGTACAGAAAGATCAAAAGAAGAAAAAGGAGCTCCTT GAGGTCACTCCCATCCGAAAACAGGCAAAAATCAAGGATAGGTCACTTATTTTGACAGATTCAGGTGGCTCACATAGAGTTATTCCTTTGAAAGGTTGTG CAATAGAAGCTGTGTCAGCTACAAGCCTTTCATCAAGAAAATGGGCCAAAAGATTTCCAATAAAAGTGGAAAGCAAAACATCACCAATATATAATGCAAG TAAGACAGTTTTTATATTTCTTGAGACATCCTGGGAGAAGGAGTCATGGTGTAAAGCCCTCCGTCTTGCTTCAAGTGATGACCAAGAAAAACTTAACTGG TTCATCAAGTTGAATGAAGAGTTCCTACGTTATTTGACATCCTTAAATACAGAATACCCTTCATTTATGAAACCCTCTGTTGGTTTCTATGTTGAGCCAG TTGATAGGGCCAGTAGGTTTGATGGTTCTGAATCAAAGGTTCGCCTGTTTTGGAAAAAGCTTGCCAGAAAGGCATCAAAGAGTGGTGTAGAAAATAAGGT GAGTTCCTTGTTAGGCCGTGAAGAGAGAAAGATTAATGATAAATATCATCCATCCCATGACCCAGCTTTTTCTGGTAGTGTGGGAAAGAATGATCCAACA TTGAAGGCACCTATCACCTCCGAGGAAGAAAATATTTCGTTACCTTCATCATCAACCAGTTCCCGTGCCTCAAGCCTAAGCCAGCTTCAAGTAATTTCTG ATGCAGACGCTGATGAAAAGTTAAATGTTGATGAGGGAACACTCTGCTGGAACTTGATTATTTCTCGGCTCTTTTTTGATGCCAAAAGCAATGACAGGAT GAAGAGTTTAACGCAAGCGCGGATTCAGAGAACTTTGTCCAATATGAGGACCCCCAGTTACATTGGCGAAGTCATATGTACTGATCTAAACCTTGGGAAT CTCCCGCCTTATATCCATGGTATTAGGGTTCTTCCTACACACATGAATGAGGTATGGGCATGGGAAGTTGATATCGAATATTGTGGCGGGTTAGTGCTAG ATATTGAAACAAGACTGGAAGTTCGTGACCTAGATTTGCAGAGAGGTCTGGTGGATACAGACGTGGGATCCAGCTCTGTTAGGGATGCTTCGTCAGACCT TCTGGAAGGTTTTGACCATCTTGGAAAGCAGTTGAATTTTTCTGAAGGGACTGTTGATTCGCGAGAATGGAAGGATGAGGATAATCCTAAGTCTGATAAA TTAAAGGACTCTAAGAGTGGCATATCAACATCAACAAATGTATCTAGGTGGAAGTCCCTCCTTAATTCTGTTGCAAAACAGGTTTCACAGGTGCCACTCT CTTTGTCAATAAGGTTAGGATCCCTTCGTGGAACAGTGCGATTACATATTAAGCCACCTCCTTCTGATCAGTTATGGTTTGGCTTCACATCCACACCTGA TGTGGAGTTTGAGTTGGAGTCTTCTGTTGGGGAACGCAAGATCACTAGTGGGCAAGTAGCGTTATACCTGATCAATAAATTTAAGGCTGCAATCCGGGAG ACAATGGTTCTTCCAAACTGTGAAAGCGTGTGCATTCCCTGGATGTTAGCAGAAAAGAATGACTGGGTCCCTCGAAATGTTGCTCCTTTTATATGGATTA ATCAAGAAGCCGCCAGTGATAATGCCACTGCACTTGAACTACTGAACTCCCAACTTGATGCAAAAACCAAGATTGAAGCTGGCAGGGAAACCTCATGCGA TCATCCAGAAAGCAGGCATAAAAAAACAAGGAATGCTGAAAATGTTCAACCACCATATTCTGATTCTTCAGATGATTTGACTCAAGCATTAAGCTCTAAC AAGCCATCAATGAAAAATGACAAGTCATCGCAAGATCTAACAAGTCCTTTGTTGGCAAACAGTGAAGCGCAAGAAACTGGCCAAAACAGCTCAGGGTATG CCTCGGAAAGTCAATCACCATCTAGGTCTCTGATATCTCTGGAAAAACAGACTCGTTCTGTTGAAGAAGACGATTCAAGACCAAAGAAAATGGGAAGGAG GGCGAAGATGCTTGATCTAGGGAAGAAGATGGGGGAGAAATTTGAAGAAAAGAGGCGCAATATTGAAGAAAAGGGTAGGAATATCGTTGACAAGATGCGA GGACCATGA
AA sequence Show only first row Show all	>Potri.017G155000.1 pacid=42814180 polypeptide=Potri.017G155000.1.p locus=Potri.017G155000 ID=Potri.017G155000.1.v4.1 annot-version=v4.1 MWPVVVIFAGGFLSGLLTLVALQALGVYVLIKRLNRKTQQQQASHSSSSSPHHQDLDPQQSLDYAHNKKGYVWVLDSDQVLKNWPVEKVQKDQKKKKELL EVTPIRKQAKIKDRSLILTDSGGSHRVIPLKGCAIEAVSATSLSSRKWAKRFPIKVESKTSPIYNASKTVFIFLETSWEKESWCKALRLASSDDQEKLNW FIKLNEEFLRYLTSLNTEYPSFMKPSVGFYVEPVDRASRFDGSESKVRLFWKKLARKASKSGVENKVSSLLGREERKINDKYHPSHDPAFSGSVGKNDPT LKAPITSEEENISLPSSSTSSRASSLSQLQVISDADADEKLNVDEGTLCWNLIISRLFFDAKSNDRMKSLTQARIQRTLSNMRTPSYIGEVICTDLNLGN LPPYIHGIRVLPTHMNEVWAWEVDIEYCGGLVLDIETRLEVRDLDLQRGLVDTDVGSSSVRDASSDLLEGFDHLGKQLNFSEGTVDSREWKDEDNPKSDK LKDSKSGISTSTNVSRWKSLLNSVAKQVSQVPLSLSIRLGSLRGTVRLHIKPPPSDQLWFGFTSTPDVEFELESSVGERKITSGQVALYLINKFKAAIRE TMVLPNCESVCIPWMLAEKNDWVPRNVAPFIWINQEAASDNATALELLNSQLDAKTKIEAGRETSCDHPESRHKKTRNAENVQPPYSDSSDDLTQALSSN KPSMKNDKSSQDLTSPLLANSEAQETGQNSSGYASESQSPSRSLISLEKQTRSVEEDDSRPKKMGRRAKMLDLGKKMGEKFEEKRRNIEEKGRNIVDKMR GP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17820			Putative integral membrane pro...		Potri.017G155000 [exp]	0	1
AT2G47210	MYB		myb-like transcription factor ...		Potri.014G117400 [exp]	2.23	0.8857
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	2.82	0.8782
AT1G64050			unknown protein		Potri.003G133100 [exp]	4.12	0.8192
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	5.29	0.8517
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.005G116400 [exp]	10.48	0.8515
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	12.00	0.8649
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.006G189100 [exp]	12.68	0.8107	STA.1
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	13.26	0.8389
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	14.07	0.8337
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	16.52	0.8389

Compare expression of checked genes

Potri.017G155000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.