Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24810 226 / 3e-69 ABC1 family protein (.1.2) AT4G24810 88 / 8e-21 Protein kinase superfamily protein (.1.2.3) AT1G65950 87 / 1e-20 Protein kinase superfamily protein (.1) AT5G50330 87 / 3e-20 Protein kinase superfamily protein (.1.2) AT2G40090 77 / 5e-17 ATATH9 ABC2 homolog 9 (.1) AT5G64940 76 / 2e-16 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 68 / 1e-13 Protein kinase superfamily protein (.1.2.3) AT5G05200 65 / 1e-12 Protein kinase superfamily protein (.1) AT4G31390 62 / 1e-11 Protein kinase superfamily protein (.1.2) AT2G39190 61 / 2e-11 ATATH8 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003600 [exp] 295 / 6e-98 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.018G003400 [exp] 297 / 6e-96 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.006G276600 [exp] 268 / 4e-85 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.004G075100 [exp] 85 / 1e-19 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.008G067900 [exp] 84 / 2e-19 AT2G40090 823 / 0.0 ABC2 homolog 9 (.1) Potri.015G091000 [exp] 82 / 1e-18 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 81 / 2e-18 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 75 / 4e-16 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 74 / 6e-16 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026970 [exp] 228 / 5e-70 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 218 / 2e-66 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 209 / 8e-64 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10032628 [exp] 80 / 1e-17 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10043122 [exp] 79 / 1e-17 AT4G24810 696 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 77 / 9e-17 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10028292 [exp] 74 / 1e-15 AT2G40090 842 / 0.0 ABC2 homolog 9 (.1) Lus10012317 [exp] 68 / 1e-13 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10006363 [exp] 68 / 1e-13 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10040196 [exp] 62 / 1e-11 AT2G40090 744 / 0.0 ABC2 homolog 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.018G000101.3 pacid=42800373 polypeptide=Potri.018G000101.3.p locus=Potri.018G000101 ID=Potri.018G000101.3.v4.1 annot-version=v4.1 ATGTGCTTCCTTCTGCTTTCATTTCAAATCTCAAGCAGTTGCAGGACTCTCTTTCCTCCTCGTCCGTTTGAAGAGGTTTGTCACACTATAGAGAAAGAAC TAGGGAAATCCACGAAGGAGCTTTTCTTGGATTTTGACGAAAATCCTCTGGCGACAGCATCGATTGCACAAGTCCATCGTGCGACATTAATTGATGGGCA GAAGGTGGTTGTTAAAGTTCAACATGAAGACATCAAGAAAATCATATTGGAGGATTTAAAGGATGCAAAATCCATTGTTGACTGGATAGCATGGGCAGAA CCGCAGTATAACTTCAGCCCTATGATCGATGAATGGTGCAAAGAAGCACCACAAGAACTCGACTTCAACCACGAAACAGAGAATACCAGAACCGTGTCTA AAAATCTTGGCTGCACAAGCAAATATGATAGCAACAAGCCCATCAATCAAGTGGATGTTTTGATTCCAGAGGTTATTCAGGAGGAATCATAG
AA sequence Show only first row Show all	>Potri.018G000101.3 pacid=42800373 polypeptide=Potri.018G000101.3.p locus=Potri.018G000101 ID=Potri.018G000101.3.v4.1 annot-version=v4.1 MCFLLLSFQISSSCRTLFPPRPFEEVCHTIEKELGKSTKELFLDFDENPLATASIAQVHRATLIDGQKVVVKVQHEDIKKIILEDLKDAKSIVDWIAWAE PQYNFSPMIDEWCKEAPQELDFNHETENTRTVSKNLGCTSKYDSNKPINQVDVLIPEVIQEES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	3.16	0.9141
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	3.74	0.9042
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	5.47	0.8996	Pt-SPY.2
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	6.32	0.8930
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.004G020300 [exp]	7.07	0.8964
AT5G13950			unknown protein		Potri.002G237800 [exp]	7.21	0.8971
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	10.81	0.8930
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	11.48	0.8958
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227600 [exp]	11.74	0.8575
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	14.14	0.8933

Compare expression of checked genes

Potri.018G000101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.