Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31120 1063 / 0 PRMT5, SKB1 ,ATPRMT5 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) AT3G06930 47 / 3e-05 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT1G04870 46 / 5e-05 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281000 [exp] 1105 / 0 AT4G31120 912 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Potri.018G071200 [exp] 46 / 5e-05 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.008G222700 [exp] 42 / 0.0009 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009545 [exp] 1122 / 0 AT4G31120 1058 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Lus10020369 [exp] 1035 / 0 AT4G31120 988 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Lus10043295 [exp] 45 / 9e-05 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 45 / 0.0001 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043412 [exp] 45 / 0.0002 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10034172 [exp] 44 / 0.0004 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05185 [poplar] [flax] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.018G000500.2 pacid=42801637 polypeptide=Potri.018G000500.2.p locus=Potri.018G000500 ID=Potri.018G000500.2.v4.1 annot-version=v4.1 ATGCCGCTGGGTGAAAAAGCAGGATTTGAAAAGAGCCAATCTCGATACTGTGGAGTGGAGACAGAGTTCAACGATGACTTTCCTCAGCTTCTCAATTTTA ACCTCTCTACTGGCTCCTTCGATTTCGTTGTCGCTCCCCTGATGAATCCCACATATCGGCCCAGCTTGTTGGAAAAAGATGGGGTTCTTCCATTTGCTGC ATCAGACCTTGTTTTGAGTCCTTCCCAGTGGAGCAGTCATGTTGTTGGAAAAATTAGTTCTTGGATTGACTTGGATTCAGAGGACGAAGCACTTCGGATG GATTCCGAAACCACATTGAAACAAGAAATAGCGTGGGCTAATCATCTATCTGTACAGGCATGCATTCTTCCTCCTCCCAAGGGTGCATCCTGTGCTAATT ATGCCAGGTGTGTAAATCAGATCTTGCAGGGCCTAAACAATATGCAGTTGTGGCTTAGGATTCCTCTGGTGAAGACTGATGATGATGCTATGGATGCGAA CTCTACTAGTTTTATTGATTCCTGGGAATTATGGAATTCATTTCGTCTTCTCTGCGAACATCACGGTCAGCTGTCCATTGCACTTGATATCTTGAGTTCC CTGCCTTCAGTGAACTCACTTGGCCGTTGGTTTGGAGAAACTGTTGCTGCAGCCATAATCAATACGGATTCCTTCCTAACAAATGGACGGGGTTACCCAT GCCTGTCAAAGCGCCATCAGAAACTGATTACTGGGTTCTTTAACCATTCAATACAGATTGTAATTTCTGGCAAACCTGCACACAGTATTCCCAGACCAAG TTCAGATTTAGCAGCCAATAATTTTGATAATAATGGTGAAAGTCCACAAAGACATTCCCTCAGGCCATATTTGGACTATGTTGGCTTTCTCTTCCAAAGG ATGGATCCCCTTCCCGAGCAAGAACGTTTTGAACTTGGTTACAGGGATTTCCTACAGTCTCCGTTGCAGCCTCTCATGGATAATCTAGAAGCCCAAACAT ATGAGACATTTGAGAGAGACTCAATGAAATACATCCAGTACCAAAGGGCAATCAGTAAAGCTTTGCTGGACAGGGTCCCTGATGACAAAGCAAGTGCAAC CACTGTTTTGATGGTTGTTGGAGCAGGACGTGGACCTCTTGTGAGGGCATCGTTGCAGGCAGCTGAAGAAACTGGACGTAAGCTGAAAATTTATGCCGTG GAGAAAAATCCCAATGCAGTTGTCACACTTCATAGCTTGGTTAAGTTAGAAGGGTGGGAAGATATTGTTACCATAATTTCTTGTGATATGCGTTTCTGGG ATGCTCCTGAAAAAGCTGATATCTTGGTTAGTGAATTACTGGGTTCTTTTGGTGACAATGAGCTATCGCCTGAATGCCTTGATGGTGCCCAAAGGTTCTT GAAGCAAGATGGAATCTCAATACCATCATCGTACACTAGTTTTATCCAACCACTGACAGCTGCCAAGCTATATAATGATGTTAAGTCGCACAAAGATCTT GTACACTTTGAGACTGCATATGTTGTCAAAATGCATAATATAGCAAGGCTCACCCCTTCCCAACCTGTCTTTACATTTACCCACCCAGATTACTCAAACA AAAAAAGCAATCAACGCTACAAAAGGTTGCAGTTTGAGATACCAAGTGACACTGGATCAGCTATGGTGCATGGATTTGCTGGCTATTTTGATGCAGAGCT TTACAAAGATGTTCATCTTGGCATTGAACCATCAATGGCGACACCAAACATGTTCAGCTGGTTTGCAATATTCTTCCCTCTTAGGACACCAGTTTGCGTA AAGCCTGGTTCTCCTTTGGAAGTACATTTTTGGCGATGTTGTGGTTCTTCTAAGGTTTGGTATGAATGGTGTGTGGCATCTCCTAACTCATCAGCTATTC ACAACAGCAATGGTCGTTCATACTGGGTTGGTCTCTAG
AA sequence Show only first row Show all	>Potri.018G000500.2 pacid=42801637 polypeptide=Potri.018G000500.2.p locus=Potri.018G000500 ID=Potri.018G000500.2.v4.1 annot-version=v4.1 MPLGEKAGFEKSQSRYCGVETEFNDDFPQLLNFNLSTGSFDFVVAPLMNPTYRPSLLEKDGVLPFAASDLVLSPSQWSSHVVGKISSWIDLDSEDEALRM DSETTLKQEIAWANHLSVQACILPPPKGASCANYARCVNQILQGLNNMQLWLRIPLVKTDDDAMDANSTSFIDSWELWNSFRLLCEHHGQLSIALDILSS LPSVNSLGRWFGETVAAAIINTDSFLTNGRGYPCLSKRHQKLITGFFNHSIQIVISGKPAHSIPRPSSDLAANNFDNNGESPQRHSLRPYLDYVGFLFQR MDPLPEQERFELGYRDFLQSPLQPLMDNLEAQTYETFERDSMKYIQYQRAISKALLDRVPDDKASATTVLMVVGAGRGPLVRASLQAAEETGRKLKIYAV EKNPNAVVTLHSLVKLEGWEDIVTIISCDMRFWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPLTAAKLYNDVKSHKDL VHFETAYVVKMHNIARLTPSQPVFTFTHPDYSNKKSNQRYKRLQFEIPSDTGSAMVHGFAGYFDAELYKDVHLGIEPSMATPNMFSWFAIFFPLRTPVCV KPGSPLEVHFWRCCGSSKVWYEWCVASPNSSAIHNSNGRSYWVGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	0	1
AT3G18580			Nucleic acid-binding, OB-fold-...		Potri.012G058800 [exp]	1.00	0.8706
AT3G23940			dehydratase family (.1.2)		Potri.003G176600 [exp]	1.73	0.8318
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.007G071100 [exp]	2.82	0.8534
AT2G27775			unknown protein		Potri.009G148400 [exp]	4.00	0.8251
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Potri.018G071200 [exp]	5.47	0.7893
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	6.32	0.8194
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	6.48	0.8157
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.010G246500 [exp]	7.34	0.7882
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	8.77	0.7981	Pt-LOS1.2
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	9.16	0.8189	Pt-EIF3.6

Compare expression of checked genes

Potri.018G000500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.