Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31130 277 / 4e-96 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280900 [exp] 340 / 6e-121 AT4G31130 253 / 2e-86 Protein of unknown function (DUF1218) (.1) Potri.007G002900 [exp] 203 / 1e-66 AT4G31130 179 / 4e-57 Protein of unknown function (DUF1218) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014344 [exp] 291 / 2e-101 AT4G31130 292 / 7e-102 Protein of unknown function (DUF1218) (.1) Lus10026052 [exp] 289 / 1e-100 AT4G31130 287 / 6e-100 Protein of unknown function (DUF1218) (.1) Lus10030037 [exp] 130 / 2e-39 AT4G31130 134 / 2e-41 Protein of unknown function (DUF1218) (.1) Lus10004839 [exp] 39 / 0.0009 ND 44 / 1e-05 Lus10030038 [exp] 0 / 1 AT4G31130 107 / 7e-31 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [poplar] [flax] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Potri.018G000600.1 pacid=42802045 polypeptide=Potri.018G000600.1.p locus=Potri.018G000600 ID=Potri.018G000600.1.v4.1 annot-version=v4.1 ATGGCTGTTACAATGAAGCATATGGCGCTCGCAATCACTGCTCTTGGAGTGATCTCTTTCCTTTTAGGCGTTGTCGCCGAAAATAAGAAGCCTGCTGCTG GAACTGCAATAACCGGAAAGGGTGTTGTGATTTGCAAGTATCCATCCGATCCTACTGTAGCCTTGGGCTTTCTCTCTGTTGGATTTCTCTTAGCAGCTTC CGTTGTTGGTTACTTGTCTCTCTTTTATCCTTACAAAGGAAAACGTGTCCCCAACTCTGCCTTGTTTCAGAGCACCAGTTTCACCATCTTTTTCAACGTT GCTGTGTTTACAGCAGGACTGGCAGCAGCTTTGATATTGTGGCCAACAATTCAAGAGCACTCTCACTTGAGCCGCACCGTTCATCACGATCCTGACTATC AATGCCCCACTGCCAAGACTGGCCTCCTTGGCGGCGGTGCTTTTGTTTCTCTCGATTCAGCCCTTTTCTGGTTAGTCGCACTCATGTTAGCGGACAATGC TCGCGAGGACTTCTTTGATGAAACGGAGAAGGATGTCAAGGGGGAACTTAATTCTGAGGTGCTTGAAGGCTCTGCGTAA
AA sequence Show only first row Show all	>Potri.018G000600.1 pacid=42802045 polypeptide=Potri.018G000600.1.p locus=Potri.018G000600 ID=Potri.018G000600.1.v4.1 annot-version=v4.1 MAVTMKHMALAITALGVISFLLGVVAENKKPAAGTAITGKGVVICKYPSDPTVALGFLSVGFLLAASVVGYLSLFYPYKGKRVPNSALFQSTSFTIFFNV AVFTAGLAAALILWPTIQEHSHLSRTVHHDPDYQCPTAKTGLLGGGAFVSLDSALFWLVALMLADNAREDFFDETEKDVKGELNSEVLEGSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31130			Protein of unknown function (D...		Potri.018G000600 [exp]	0	1
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	11.74	0.7006
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Potri.006G083400 [exp]	11.83	0.7335
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.005G249200 [exp]	15.68	0.7834	Pt-FTSH2.1
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158200 [exp]	46.43	0.7389	Elip1,Pt-ELIP2.2
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441180 [exp]	58.09	0.6636
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158000 [exp]	60.82	0.7220	ELIP2.1,Elip4
AT4G17670			Protein of unknown function (D...		Potri.001G148700 [exp]	62.78	0.6943
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.012G081700 [exp]	66.82	0.7106
AT5G38260			Protein kinase superfamily pro...		Potri.007G125000 [exp]	69.05	0.6565
AT4G10330			glycine-rich protein (.1)		Potri.019G063300 [exp]	86.49	0.6627

Compare expression of checked genes

Potri.018G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.