Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53440 200 / 1e-58 Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280800 [exp] 502 / 6e-176 AT3G53440 159 / 9e-43 Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039632 [exp] 248 / 2e-77 AT3G53440 186 / 5e-53 Homeodomain-like superfamily protein (.1.2) Lus10002159 [exp] 248 / 5e-77 AT3G53440 195 / 2e-56 Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G000700.2 pacid=42801716 polypeptide=Potri.018G000700.2.p locus=Potri.018G000700 ID=Potri.018G000700.2.v4.1 annot-version=v4.1 ATGCCAATACATACAAGAAACTCAAAAAATCTGGCTGAAAAAATTCACAATGATTTCCTTTCCCCACAAAAACAGAACCCCGCTGAAAAAAGATCCCTAG TTTGTGGCATTTCCCATTCTGGCTCTGGCTCTAGGTCCGCAAAATTCCCAGTCTTTCGTAACAATGTGGTCGGTGTCCGTGAGGTTTCAACTCCTAGGCG ATCTTTGTTGCAGGACCCAAATACAAACCAACTTTTCAACAACAAGACTAGTAATTGCAAGTCTGATGATGAGGGGGTTTCGTCTTCGAATAAAGTAAAA GGTGAAGTGGAAACCAGTAATAGGAGGGGTGTTATTATTGGACTTGAAGCATCCAAAGCAAGAGTGAGTGCTGTTGGTATCTGTGAAACCAAGAAACTAG AGATTGCTACTGCTGATAATAATCATAGGAAGAGAGAGAGAGCAGAGGGAGCTAATAAACGGGCTGTTGAAGGGTGGACAAAGGATCAGGAAATGGCTTT GCAAAGAGCTTTCTTTACAGCCAAGCCTACCCCTAATTTCTGGAAGAAGGTTTCTAAGCTGGTTCCTGGAAAGTCTGCACAGGATTGTTTTGACAAAGTT AACTCTGACCACATGACTCTACCCCAAACCTTCCCGCGATCAAGGGCTAAGAGAATAAACTCATCACCGCTAGAATGTTTTTCTATCTCTGTTAGTAAAC TGCTTAATCCCTCTGGCCCAAAGAATAAAAGATTGAGTTGTAAGCAGAAGAGTCATCTTGCACATAAAAATGTTAGAGAGTTATTGCAAAAGCAGAATCA AGTGAACCGAGATTATGAAGCAGACTTGTTCTCCATTCTTGAACCTAACCAGAATTCATCTATGCAAGATTCTAAGCTGGCTGTTGAAATTTCAACCCCT GAGCATTCACAAGAAAAACTGGGTTTTCTTCACAAACTCCATGAGAGTTCTTCTGACCATAAAAGGCCCCTTTTGAGATTGAGTTCATGTGGGATAGATA TTGTAAGTCCCCCAGTACTGAAGCAGGTGAAAAACAAGGCTTTACATGAGAAATATATTGACCAATTACACTGCAGAGAAGCTAAGAGAAAAGCAGCACA TGCACGGGCAGGAAAATCTGTTGTAGGAAAAGAGAATAGGGGAGAGATCAATGTTCAGAAAATAGATGTGGTTAGAGCTGCAAAAAATGCCCTAGTTTCG GATGTAAGAGATGCTATTTATCAGCTCCAAGATGTACAAACTAATGCCAGCAGCTCTTCCGATTTTCATGATGATGGTGTTGGAAGTGATGATGACGGAG GTGAAAGCGTACTCTGA
AA sequence Show only first row Show all	>Potri.018G000700.2 pacid=42801716 polypeptide=Potri.018G000700.2.p locus=Potri.018G000700 ID=Potri.018G000700.2.v4.1 annot-version=v4.1 MPIHTRNSKNLAEKIHNDFLSPQKQNPAEKRSLVCGISHSGSGSRSAKFPVFRNNVVGVREVSTPRRSLLQDPNTNQLFNNKTSNCKSDDEGVSSSNKVK GEVETSNRRGVIIGLEASKARVSAVGICETKKLEIATADNNHRKRERAEGANKRAVEGWTKDQEMALQRAFFTAKPTPNFWKKVSKLVPGKSAQDCFDKV NSDHMTLPQTFPRSRAKRINSSPLECFSISVSKLLNPSGPKNKRLSCKQKSHLAHKNVRELLQKQNQVNRDYEADLFSILEPNQNSSMQDSKLAVEISTP EHSQEKLGFLHKLHESSSDHKRPLLRLSSCGIDIVSPPVLKQVKNKALHEKYIDQLHCREAKRKAAHARAGKSVVGKENRGEINVQKIDVVRAAKNALVS DVRDAIYQLQDVQTNASSSSDFHDDGVGSDDDGGESVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53440			Homeodomain-like superfamily p...		Potri.018G000700 [exp]	0	1
AT1G25570			Di-glucose binding protein wit...		Potri.008G117000 [exp]	9.16	0.6314
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.001G459700 [exp]	12.12	0.6080	MUR4.1
AT5G67240		SDN3	small RNA degrading nuclease 3...		Potri.007G048000 [exp]	13.56	0.6835
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	22.58	0.6413
AT1G14810			semialdehyde dehydrogenase fam...		Potri.008G135700 [exp]	31.14	0.6135
					Potri.001G178400 [exp]	45.05	0.5583
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	58.80	0.5563
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Potri.008G209100 [exp]	115.25	0.5171
AT2G01990			unknown protein		Potri.008G140900 [exp]	126.55	0.5426
AT5G11760			unknown protein		Potri.018G056000 [exp]	130.70	0.5352

Compare expression of checked genes

Potri.018G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.