Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64150 266 / 2e-87 RNA methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G221400 [exp] 389 / 5e-136 AT5G64150 413 / 2e-144 RNA methyltransferase family protein (.1) Potri.001G003632 [exp] 197 / 1e-63 AT5G64150 170 / 2e-52 RNA methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015342 [exp] 290 / 1e-96 AT5G64150 393 / 2e-136 RNA methyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G000850.1 pacid=42800775 polypeptide=Potri.018G000850.1.p locus=Potri.018G000850 ID=Potri.018G000850.1.v4.1 annot-version=v4.1 ATGAAGCTAGGCCTGAGCCGAGCATGTCTTTATAGCTGCTGTTGCACACTGATTTTCTCTTCTTCAATGCCATCTTTAACAACAATAAAACCAAAAAACC CCCTCGTTTTGAGGCCACCTAATTATTTAGTTACTTCATCAGACCTTAAAAAATGGTATGGTTGGGCAAAAAACCTTGCTTCCTCTGTTGGGTCGTCTTT TGAGCTCAGTTGGCTTCTTGAGGACTCACTTGAAAACAGCTCCTACTCCTCCTCCTCCTCATGCTTTGGTAAAAATGAGAATGTCATTATATGGATAAGT TTGGATGATCTTTACCAATTGTGGAAGCAGAGGATTGAAGAGAGGAGGCCCTTCCAGTGTATTGTAGGGTGTGAGCACTGGAGGGACTCGGTGTTGAGTG TGCAAGAAGGGGTCTTGATTCCGAGGTCAGAGACAGAATTGATTGTTGATCTAGCAAGTGATGTGGTTTCCAACAATGAAAAATTGGGACAGGGGTTGTT GGCAGATGTGGGTACAGGTAGTGATGCTATTGCTATAGGTATTAGAAAACTTTTGGGGAACCAGTCACAGTTTCAGTGGCAACCCTTAATGTTCAAAGGT ATGGGCCTTCAGGATGTGATTGAAGTAAGGCAAGAATCTTGGTTTGAGCCATTAAAGGATGTTGAAGGACAAATTGTAGGTATTGTGAGTAATCCACCAT ACATACCAAGTGACAATATTTCTGGACTACAAGCTGAAGATGGTAGACATGAACCAAGACTCGCATTAGATGGTGGTGCTAGTGGCATGGATTATCTTCT TCATCTTTACAATATGGCCGCTGCAATTGGGGAGAAGCAATGTGAGTTTCTTGTCGATTGCATGCAAAATGACATATTGCAGGAAGCTTTTGTAATCTGA
AA sequence Show only first row Show all	>Potri.018G000850.1 pacid=42800775 polypeptide=Potri.018G000850.1.p locus=Potri.018G000850 ID=Potri.018G000850.1.v4.1 annot-version=v4.1 MKLGLSRACLYSCCCTLIFSSSMPSLTTIKPKNPLVLRPPNYLVTSSDLKKWYGWAKNLASSVGSSFELSWLLEDSLENSSYSSSSSCFGKNENVIIWIS LDDLYQLWKQRIEERRPFQCIVGCEHWRDSVLSVQEGVLIPRSETELIVDLASDVVSNNEKLGQGLLADVGTGSDAIAIGIRKLLGNQSQFQWQPLMFKG MGLQDVIEVRQESWFEPLKDVEGQIVGIVSNPPYIPSDNISGLQAEDGRHEPRLALDGGASGMDYLLHLYNMAAAIGEKQCEFLVDCMQNDILQEAFVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64150			RNA methyltransferase family p...		Potri.018G000850 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	7.00	0.7681	NPH4.1
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	21.44	0.7481
AT1G48360			zinc ion binding;nucleic acid ...		Potri.002G233800 [exp]	23.68	0.6997
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	25.98	0.7014	Pt-UBP12.2
AT3G61690			nucleotidyltransferases (.1)		Potri.012G000900 [exp]	28.35	0.7477
AT1G72390			unknown protein		Potri.003G069200 [exp]	31.87	0.7394
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	32.21	0.7317
AT1G48090			calcium-dependent lipid-bindin...		Potri.008G100600 [exp]	35.49	0.7370
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	46.73	0.7194
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	63.49	0.6834

Compare expression of checked genes

Potri.018G000850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.