Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31140 669 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 634 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 503 / 2e-175 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 467 / 2e-161 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 463 / 4e-160 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G24330 464 / 5e-160 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 462 / 1e-159 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 462 / 2e-159 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 458 / 5e-158 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 433 / 1e-148 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280700 [exp] 826 / 0 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 637 / 0 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 633 / 0 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 547 / 0 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G078900 [exp] 499 / 3e-174 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 495 / 1e-172 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 489 / 3e-170 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.019G032900 [exp] 472 / 9e-164 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G002100 [exp] 456 / 4e-157 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024535 [exp] 652 / 0 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 627 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 625 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 538 / 0 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 533 / 0 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 487 / 3e-169 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 481 / 7e-167 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 478 / 9e-166 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039095 [exp] 474 / 3e-164 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 470 / 2e-162 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.018G000900.1 pacid=42802219 polypeptide=Potri.018G000900.1.p locus=Potri.018G000900 ID=Potri.018G000900.1.v4.1 annot-version=v4.1 ATGGGTTTGGTCAAAGGAGTGGCGCTGTCTACAAGGCTAAGGCAACAACCTCTTGGTCTAGCCTTGTGCTGCCTATATATTCTTCAACTACTGCTGCTGT TGCTGAGTTCCGTAAGTGGTACTGGAGTAAACTGGGGAACACAGGCAACACATCCTCTGCCGCCTTCCACGGTGGTTAACATGCTCAGAGACAACGGTAT TCAGAAGGTTAAGCTATTTGATGCTGATTCAGCTACTCTAAATGCTTTTGCTAATTCTGGGATTCAAATCATGGTGGGCATCCCCAATGATATGCTCTAT ACTCTGGCTAATAGTGAACAAGCTGCTGAGAATTGGGTGGCCAAGAATGTCTCTTCCCATATCTCTTCTGGTGGTGTAGACATCAGGTACGTTGCAGTTG GAAATGAGCCGTTCTTGTCAACATACAATGGAAGCTTTCTGGGAACAACTCTTCCTGCTCTTCAAAATATCCATTCAGCTTTAACGAAAGCCGGACTAGA CACTCGGGTGAAAGTCACCGTTCCCCTCAATGCTGATGTATATGAGAGTCCCACAAATATCCCGTCCGATGGTAACTTCCGCAAAGACATCCAAGATCTC ATGCTGTCGATTGTCAAGTTCTTGAGCGACAATGGGGCTCCCTTCACTGTCAATATCTATCCCTTTATAAGCCTTTACACTACTCCTAATTTCCCCCTAG GCTTTGCATTCTTTAACAACACTAGTTCATCTTCCTTGACTGATGGTGGAAAAATCTACGACAATGTGTTCGATGCGAATCATGACACCCTTGTATGGGC CTTGCAGAAAAATGGATATGGAAACTTGTCCATTGTCATTGGGGAGATTGGATGGCCTACCGATGGAGACAAAAATGCAAACTTGAACTATGCACAGCAG TTCAACCAAGGGTTTATGAATAATGTCATTGCCGGTAAGGGAACCCCAATGCGTCCTGCTCCTGTGGATGCCTATTTGTTTAGTCTCTTCGACGAGGATG CCAAAAGCATTCAGCCTGGTAATTTTGAGCGACACTGGGGATTATTTTACTTGGATGGGCAGCCTAAGTATGCACTTAGCCTGGGGACGACGAATTCGAA TGGTCTGGTACCAGCAAGGGGTGTGAGCTATTTAGCTAAAAAATGGTGTATTATGTCTCCATCAGCAAGCCTAGACGATCCGCAGGTGGCACCAAGTGTG AGTTATGCTTGTGCTAGTGCAGACTGTACTAGTCTGGGCTATGGGACTTCTTGTGGAGATTTAAGTGCACAGGGCAACATCTCCTACGCATTTAACAGTT ACTACCAGCAGAACAATCAACTTGAAAGTGCTTGTAGGTTCCCAAATAATCTTTCAGTTGTTACAAGTAATGACCCATCTACCGGGACTTGCAAATTCAT GATCATGATTCAAAGTCAAGCAGTCACATCTGGTGTTGAAGGTGGAAGAGGGTTTTCAATGTCTAGTTTTGTAACGTTTGCCGTCGCGTTTCTTTCAGCG TTTTTGTGA
AA sequence Show only first row Show all	>Potri.018G000900.1 pacid=42802219 polypeptide=Potri.018G000900.1.p locus=Potri.018G000900 ID=Potri.018G000900.1.v4.1 annot-version=v4.1 MGLVKGVALSTRLRQQPLGLALCCLYILQLLLLLLSSVSGTGVNWGTQATHPLPPSTVVNMLRDNGIQKVKLFDADSATLNAFANSGIQIMVGIPNDMLY TLANSEQAAENWVAKNVSSHISSGGVDIRYVAVGNEPFLSTYNGSFLGTTLPALQNIHSALTKAGLDTRVKVTVPLNADVYESPTNIPSDGNFRKDIQDL MLSIVKFLSDNGAPFTVNIYPFISLYTTPNFPLGFAFFNNTSSSSLTDGGKIYDNVFDANHDTLVWALQKNGYGNLSIVIGEIGWPTDGDKNANLNYAQQ FNQGFMNNVIAGKGTPMRPAPVDAYLFSLFDEDAKSIQPGNFERHWGLFYLDGQPKYALSLGTTNSNGLVPARGVSYLAKKWCIMSPSASLDDPQVAPSV SYACASADCTSLGYGTSCGDLSAQGNISYAFNSYYQQNNQLESACRFPNNLSVVTSNDPSTGTCKFMIMIQSQAVTSGVEGGRGFSMSSFVTFAVAFLSA FL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.018G000900 [exp]	0	1
AT5G03700			D-mannose binding lectin prote...		Potri.008G016900 [exp]	1.00	0.9525
AT3G53510		ABCG20	ATP-binding cassette G20, ABC-...		Potri.002G156900 [exp]	5.83	0.9517
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Potri.010G024500 [exp]	7.74	0.9311
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007000 [exp]	7.74	0.9386	IFS1.39
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	8.66	0.9476
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.007G020200 [exp]	12.40	0.9341
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.013G044500 [exp]	12.48	0.9391
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056450 [exp]	13.85	0.9334
AT4G22790			MATE efflux family protein (.1...		Potri.003G116700 [exp]	13.85	0.8723
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078501 [exp]	14.42	0.9319

Compare expression of checked genes

Potri.018G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.