Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31150 308 / 2e-105 endonuclease V family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000685 [exp] 293 / 1e-97 AT4G31150 264 / 4e-86 endonuclease V family protein (.1.2) Lus10024534 [exp] 94 / 4e-23 AT4G31150 91 / 3e-22 endonuclease V family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF04493 [poplar] [flax] Endonuclease_5 Endonuclease V
Representative CDS sequence Show only first row Show all	>Potri.018G001000.3 pacid=42800950 polypeptide=Potri.018G001000.3.p locus=Potri.018G001000 ID=Potri.018G001000.3.v4.1 annot-version=v4.1 ATGGATGATCATGGTCTTCGTCATGGACGGGATCAGGGAGAATCATCATCATCAATTGAAATCCAAAATCAATGGAGAGAGATTCAAGATTTACTTAAAG AGAGGTTGATAACACAGGATGATTTCCCTTGGAAACTGCCCATACCCAGCAGTAGCGGCAATGTTGTTGTTGAAGAAGAAGAAGGAACGTTATTGAAATA TGTGGGTGGGGTTGATGTAAGCTATTCTAAGGAATTAGACTCAGCAGCAGCAGCAGCATCAACGGCAGCATGCGGATGTGGAAGCCTTGTTGTTTTGGAT GTCACCACTCCCACACTGCAAGTCGTCTACCAAGATTTCTTTCTCCTCACCAATTTCGATGTCCCTTATATTCCTTCCTTCCTTGCTTTCCGAGAGGCTC CAATACTCTTACAACTCTTACAGAAGATGAAAAACACTGACAATCCATTCTACCCCCAGTTACTGCTTGTTGATGGCAATGGTTTGCTTCATCCTCGAGG TTTCGGCTTGGCTTGCCATCTTGGTGTCCTGGCTAATATCCCCACCATTGGCATAGGAAAGAATCTGCATCATATTGATGGTCTCACTCAATCTGGAGTG AGACAGCTTCTTCAGGCCAAAGATAACAGTGGTGAAGATTTTATTACTTTGACGGGATCCTCTGGCTGTGTATGGGGAGCGGCAATGAGATCAACCAAGG GCTCATGTAAACCCATATATATTTCTGTTGGTCACCGTGTCTCTCTCAATACTGCCATCAAAATTGTGAAAATGATTTGCAAGTATCGTGTGCCAGAGCC TATCCGGCAGGCTGATATAAGATCAAGAGACTACCTCCAAAAGAATAGTTGTGGGAATGGTCGAACATTGCAGTAG
AA sequence Show only first row Show all	>Potri.018G001000.3 pacid=42800950 polypeptide=Potri.018G001000.3.p locus=Potri.018G001000 ID=Potri.018G001000.3.v4.1 annot-version=v4.1 MDDHGLRHGRDQGESSSSIEIQNQWREIQDLLKERLITQDDFPWKLPIPSSSGNVVVEEEEGTLLKYVGGVDVSYSKELDSAAAAASTAACGCGSLVVLD VTTPTLQVVYQDFFLLTNFDVPYIPSFLAFREAPILLQLLQKMKNTDNPFYPQLLLVDGNGLLHPRGFGLACHLGVLANIPTIGIGKNLHHIDGLTQSGV RQLLQAKDNSGEDFITLTGSSGCVWGAAMRSTKGSCKPIYISVGHRVSLNTAIKIVKMICKYRVPEPIRQADIRSRDYLQKNSCGNGRTLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	0	1
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	1.73	0.9070	Pt-VPS33.2
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	6.63	0.9016
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	9.21	0.8745
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	9.48	0.8938
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	9.79	0.8951
AT2G16405			Transducin/WD40 repeat-like su...		Potri.004G160000 [exp]	11.09	0.8957
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	11.61	0.8947	Pt-THRRS.2
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.002G131400 [exp]	11.83	0.8756
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	14.69	0.8723	ATKEA4.2
AT3G28430			unknown protein		Potri.006G204600 [exp]	14.73	0.8928

Compare expression of checked genes

Potri.018G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.