Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27660 120 / 3e-30 Trypsin family protein with PDZ domain (.1) AT3G27925 51 / 7e-07 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT3G03380 50 / 2e-06 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G001550 [exp] 299 / 1e-98 AT5G27660 102 / 1e-23 Trypsin family protein with PDZ domain (.1) Potri.018G001500 [exp] 247 / 3e-78 AT5G27660 102 / 2e-23 Trypsin family protein with PDZ domain (.1) Potri.013G018300 [exp] 131 / 3e-34 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.001G348800 [exp] 58 / 4e-09 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.017G128300 [exp] 49 / 5e-06 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037815 [exp] 109 / 2e-26 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 64 / 4e-11 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10008781 [exp] 57 / 9e-09 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10017637 [exp] 49 / 5e-06 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10009122 [exp] 45 / 8e-05 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 42 / 0.0007 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.018G001301.1 pacid=42801901 polypeptide=Potri.018G001301.1.p locus=Potri.018G001301 ID=Potri.018G001301.1.v4.1 annot-version=v4.1 ATGAATTTTTCAGTTGATAGAATTCCGCCTCCGCCTCCGTTTTTGAAAAAGCGGGATGATGAATTGAAACTCAATACAAATTTAGCTGCTTTGAAAGTTT CTCTATCGGTTGTGTGCCTTGTTGCATACCACAGAGGTAGCGGAGAAAAGTGTTTTGCGTGCACCGGCACAATTGTAGAATGTGAAGGTGCAGCAGGAGA TGATGGTAAATTCGATGCTACCATATTGACTTCTGCTTCTCTCCTTCACTCTTATAGAGACCCTTCTCAAATCACGGTTGAAGTACATCTATCAGATGGC AGTTCGTACGAGGGAGAGGTTTCAGCTTTTGATTTACACTACAACATTGCTACCGTCAAGTTCAAGCCTGATAAACCTCCTCAAAAAGCATGTCTTAAAT GGATAGATGATTCTATGTCTTTACAACCTGATAATGATCACACCATGGTAGAGGCTAACTTTTTTAACCTTTGTCCCGGGGATAAAGTAATAGCTTTAGC CCGGGTGCAAGATCATCACCACCAGCTTCTTGTGAGTTCTGGTGATTTCAGTATTTATTGCTGCGGATTGGATTGCCAAGAGCTCCTAATGACAACTTGC GAGATTACTACACATTTTATTGGGGGGCCACTCATTAATTGGGATGGAGAAGTCATCGGGATCAATTTCTTTTGGAAGGGCCAGACTCCTTTTCTGCCCA TCAACATAGCTTTTAGATGCCTGGACCACTTAAATAAGAAAAGGAGTGTCCCTCATCCTTGGCTTGGGATGGAATTTACTAATCTTTATGCTGCTGACGT GGTCACTTTGGAGGAAATAGTTCAATTGTTCCCTCTTGTTTGCAAAGGGGTTATAGTTGAAGAGGTAACGGAAGAGTCTCCTGCTGATCGTGCTGAGATA CAACCCAATGATGTTATAATTAAATGCGACAGAGAGGTGGTTAGCTGCTCCTTAAAGTTCTTTGGAATGATTTGGGACAAGGTTGGGAAATCTATGGAGT TAGAGGTGATGAGGGCAGGTGTTTGTGGGCCTTTGAAGCTCGCTATACTCGCCGATGACCTTCTTCCAGACAGTTATAACAGTTGGCCAATTTAA
AA sequence Show only first row Show all	>Potri.018G001301.1 pacid=42801901 polypeptide=Potri.018G001301.1.p locus=Potri.018G001301 ID=Potri.018G001301.1.v4.1 annot-version=v4.1 MNFSVDRIPPPPPFLKKRDDELKLNTNLAALKVSLSVVCLVAYHRGSGEKCFACTGTIVECEGAAGDDGKFDATILTSASLLHSYRDPSQITVEVHLSDG SSYEGEVSAFDLHYNIATVKFKPDKPPQKACLKWIDDSMSLQPDNDHTMVEANFFNLCPGDKVIALARVQDHHHQLLVSSGDFSIYCCGLDCQELLMTTC EITTHFIGGPLINWDGEVIGINFFWKGQTPFLPINIAFRCLDHLNKKRSVPHPWLGMEFTNLYAADVVTLEEIVQLFPLVCKGVIVEEVTEESPADRAEI QPNDVIIKCDREVVSCSLKFFGMIWDKVGKSMELEVMRAGVCGPLKLAILADDLLPDSYNSWPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27660			Trypsin family protein with PD...		Potri.018G001301 [exp]	0	1
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022400 [exp]	5.29	0.9847
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.001G156900 [exp]	8.88	0.9873
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.008G047900 [exp]	11.22	0.9779
AT3G14880			unknown protein		Potri.001G390100 [exp]	14.86	0.8879
AT3G09870			SAUR-like auxin-responsive pro...		Potri.006G125100 [exp]	17.02	0.9778
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Potri.004G051900 [exp]	17.14	0.9842
AT2G12646			PLATZ transcription factor fam...		Potri.010G107600 [exp]	18.43	0.9839
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Potri.010G165700 [exp]	22.24	0.9809
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008406 [exp]	26.03	0.9795
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G006000 [exp]	28.00	0.9780	CYP81S3,Pt-CYP81.3

Compare expression of checked genes

Potri.018G001301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.