Plant FIBer expression Database

Potri.018G001500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27660 101 / 4e-23 Trypsin family protein with PDZ domain (.1)
AT3G27925 50 / 1e-06 DEGP, DegP1, DEG1 DegP protease 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G001550
[exp]
277 / 4e-89 AT5G27660 102 / 1e-23 Trypsin family protein with PDZ domain (.1)
Potri.018G001301
[exp]
245 / 1e-77 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1)
Potri.013G018300
[exp]
124 / 5e-31 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1)
Potri.001G348800
[exp]
54 / 1e-07 AT3G27925 595 / 0.0 DegP protease 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037815
[exp]
114 / 2e-27 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1)
Lus10017093
[exp]
68 / 4e-12 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1)
Lus10008781
[exp]
57 / 2e-08 AT3G27925 641 / 0.0 DegP protease 1 (.1)
Lus10022234
[exp]
52 / 5e-07 AT3G27925 623 / 0.0 DegP protease 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0124 Peptidase_PA PF13365 Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence
>Potri.018G001500.2 pacid=42800442 polypeptide=Potri.018G001500.2.p locus=Potri.018G001500 ID=Potri.018G001500.2.v4.1 annot-version=v4.1
ATGGCCATTAGAATGGAATCCAGGGACAGGCTACAGGGTGTAATGGAAAAAGAGATTCGGTCACCATGGCAACGGAAAGCACGCCGGCGTACTGTTGGTT
GTGTTGCATTCCGTTCCCATTCTTTCAACGAGAGTTTTGATGAAAGGATAGAGGAGAATTTCTACTTGGACCTTCCCACCAAATTATCGGCTCTTAAAGC
TTCCCAATCTGTTGTCAGTCTCGTGTCTCGCGCTCGCAGAGGCGTGAAAAATAAATTAGTAATTCCTTGCTCGGGAACCATCATAGGATCCAAGCTTGAA
GAAAATGGTTCATTCACCCATACCATCCTCACTTCTGCCAATCTCCTCATTACCCGCGCTGCTTCAACTTCGGAGGATCATCCTCCTCTGGCTCCTGAAC
CTGGTATCAAGGTTTATGTGTATTTATCAAGTGGTGATTCATTTGAGGGTGAAATTTTTGGTTTTAATTTTCATTACAACATTGCCATCATCAAATTCAA
GTCCAGCTCACGCTTCCCGACTGCAATTCTGAAGCACATAGATGGTTCCATTCCTCTAACTACCAAAGCTGAGCTACAGTACACGTCATTTGGACTCCGT
CCTCACGCCGAACCTTCAGATTTATTCAACCTTTGTCCTGGAGAGAAGGTAATAGCACTTGGCCGCCATTACTTATCCCACAGTCTCATGGTTGCACCAG
GTGCTTTCAGACCTGGTGTGCGCAGACCAGGTTTGCTCAGACCACGTTTTTCCGGACCTGGTTTCCGTGATTATGATTGCGTAGAGCTTCTCACAGCAAG
TTGCAGGATTACTGTAGGTGGTAGTGGGGGACCCCTTATCAATTGTAATGGTGAAGTCATTGGAATCAATTTCTATGAGCATTCTTATACTTCTTTTCTG
CCAATCAATATTGCTTCTAGGTGCTTGGAATGCTTGGAGAAAAATGCGAGAGTTCCTCAACCTTGGTTTGGGGTTAAAGTGACTAGTTGTAATGCAATAA
GTGCAAATATGTTTGAAAAAATAATTCAGAAGTTTGGCCACATCATCGAAGGTGTTCTTGTTGAAGAGGTTATACCAGAATCTCCTGCTTGTTCTTCTGG
CGTGCGCCCTAATGACATCATCATTCGATGTGGTAAACAGGCTGTTGTATCTTCCTCTGAGTTCTATGGAACTTTGCTCGACAATACTGGAGAATCCATG
GAGGTAATTGTGATGAGGCCATGTCTTGGTAGAGATTTGAGTCTAACCATAAAGGTTATCGATGAAACAAACCCGGAGAAATATTACAGATGGCCGGTTC
CAGAAGAGGCATTTTGA
AA sequence
>Potri.018G001500.2 pacid=42800442 polypeptide=Potri.018G001500.2.p locus=Potri.018G001500 ID=Potri.018G001500.2.v4.1 annot-version=v4.1
MAIRMESRDRLQGVMEKEIRSPWQRKARRRTVGCVAFRSHSFNESFDERIEENFYLDLPTKLSALKASQSVVSLVSRARRGVKNKLVIPCSGTIIGSKLE
ENGSFTHTILTSANLLITRAASTSEDHPPLAPEPGIKVYVYLSSGDSFEGEIFGFNFHYNIAIIKFKSSSRFPTAILKHIDGSIPLTTKAELQYTSFGLR
PHAEPSDLFNLCPGEKVIALGRHYLSHSLMVAPGAFRPGVRRPGLLRPRFSGPGFRDYDCVELLTASCRITVGGSGGPLINCNGEVIGINFYEHSYTSFL
PINIASRCLECLEKNARVPQPWFGVKVTSCNAISANMFEKIIQKFGHIIEGVLVEEVIPESPACSSGVRPNDIIIRCGKQAVVSSSEFYGTLLDNTGESM
EVIVMRPCLGRDLSLTIKVIDETNPEKYYRWPVPEEAF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G27660 Trypsin family protein with PD... Potri.018G001500
[exp]
0 1
Potri.001G031200
[exp]
1.00 0.9952
AT3G63470 SCPL40 serine carboxypeptidase-like 4... Potri.001G261104
[exp]
13.26 0.9064
AT5G03610 GDSL-like Lipase/Acylhydrolase... Potri.010G236951
[exp]
24.31 0.8498
Potri.004G183032
[exp]
28.24 0.7759
AT1G29660 GDSL-like Lipase/Acylhydrolase... Potri.011G075900
[exp]
38.43 0.9285
AT1G24260 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-... Potri.001G058400
[exp]
43.58 0.9087
Potri.001G466132
[exp]
45.00 0.9112
AT3G59600 NRPE8B, NRPD8B,... RNA polymerase Rpb8 (.1) Potri.013G120400
[exp]
47.64 0.8154 ATRPABC16.1
AT2G24370 Protein kinase protein with ad... Potri.018G002400
[exp]
66.48 0.8674
AT2G26590 RPN13 regulatory particle non-ATPase... Potri.003G027722
[exp]
71.77 0.8650

Potri.018G001500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.