Plant FIBer expression Database

Potri.018G001550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27660 102 / 1e-23 Trypsin family protein with PDZ domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G001301
[exp]
281 / 8e-92 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1)
Potri.018G001500
[exp]
263 / 1e-83 AT5G27660 102 / 2e-23 Trypsin family protein with PDZ domain (.1)
Potri.013G018300
[exp]
128 / 1e-32 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037815
[exp]
107 / 2e-25 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0466 PDZ-like PF13180 PDZ_2 PDZ domain
CL0124 Peptidase_PA PF13365 Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence
>Potri.018G001550.1 pacid=42800591 polypeptide=Potri.018G001550.1.p locus=Potri.018G001550 ID=Potri.018G001550.1.v4.1 annot-version=v4.1
ATGGAGTCTGCTACCTCTTCTAAGCGGCAACGAGTTGGTAGTGTACAACGTGCGGCGAGGGATACAGAGGATGAGGAGGAAGAGAAGATGTTTGATGTAC
GGAGTGTGAACAAAGATTTGGATATTGATTCCAAAATAGCTGCTCTCAAGGTTTCTCTGTCTGTTGTGTGCCTCTTGTCCCGCACAGGTGGTAAGAATTT
ATGTAGATGCTCGGGGACGGTCGTAGAATGTGAGCGCAAACAAGAGAGTGGTGGCGGGGGTGGCGGCGGTGAATTTGTTGCTACCATCCTCACTTCTGCT
AACCTTCTCAGATTTCCTTCTTATTCTAGATATACTTTTTTGGCCCCTGACATCACCGTTGAGGTTTATTTATCAAAGGGCAAGCCATTGAAGGGACAAG
TTCTTGGGTATGATTTCCACTACAACCTTGCCATCATTCAAATCACAACCGACTATCCCCTTCCTACAGCAATTCTCACAGACATAGATGTTTCGATGCC
TCTAACTCCTACACCTCTGCTCACTGATTCAAAACCATTTGGCCTTCGTCCTCATACGGTAGATTCAAGTTTGTTTAAGCTCCGTGGCGGTGACAAGGTA
ATAGCCTTGGCCCGAACTCTTACCTGCCAATGTCTTCTAGTTGAATCTGGCACGTTAAGTATCTATAAGAGCAGCGGGCTTCATTGTCAAGAGCTCCTCT
ACACTTCTTGCAAGACTACTCAAGTTTATATTGGTGGGCCTCTTATAAATTGTGATGGAGAGGTCATTGGGATTGTTTTTCATTATGATGGCTATGCTGC
TTTTTTGCCCATCAACATAGCTTCTAGATGCTTGCAGCTTTTAAAGAGAGACAGGGGAGTCTGTCATCCTTGGTTGGGGATGACTCTGACCAATTCTTAC
GCTGCCAAGGCATCTGTTTTGGAGGAAATAATACAAAAGTTCCCTCATATCAGCAATGGAATTATAGTTAAAGACGTAATGAAAGGGTCTCCTGCAGCAC
ATGCTGGAATAGTCTCCAAAGACATTATAGTGGAATGTGATGGAGAAGTTGTTAAATGTTCCTTAGAGTTTTGTAGAAAGGTGTGGAATAGGGCTAGCCA
ATCCGTGGAAGTGGTTGTGATGAGACCAAGTTCCAGCAAGCCTGTGAAGCTAACTATGGTTGTTGATGAGTTAAAACCTGCTAGCTATAACTGTTGGCCA
GTTCCCGCAGATAAAGAGTATGCTGCAGTTATATGGAGATCAATTGATTTAGCAGCGCAAAGAGCTACCACGTGGCTCGATACTTAA
AA sequence
>Potri.018G001550.1 pacid=42800591 polypeptide=Potri.018G001550.1.p locus=Potri.018G001550 ID=Potri.018G001550.1.v4.1 annot-version=v4.1
MESATSSKRQRVGSVQRAARDTEDEEEEKMFDVRSVNKDLDIDSKIAALKVSLSVVCLLSRTGGKNLCRCSGTVVECERKQESGGGGGGGEFVATILTSA
NLLRFPSYSRYTFLAPDITVEVYLSKGKPLKGQVLGYDFHYNLAIIQITTDYPLPTAILTDIDVSMPLTPTPLLTDSKPFGLRPHTVDSSLFKLRGGDKV
IALARTLTCQCLLVESGTLSIYKSSGLHCQELLYTSCKTTQVYIGGPLINCDGEVIGIVFHYDGYAAFLPINIASRCLQLLKRDRGVCHPWLGMTLTNSY
AAKASVLEEIIQKFPHISNGIIVKDVMKGSPAAHAGIVSKDIIVECDGEVVKCSLEFCRKVWNRASQSVEVVVMRPSSSKPVKLTMVVDELKPASYNCWP
VPADKEYAAVIWRSIDLAAQRATTWLDT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G27660 Trypsin family protein with PD... Potri.018G001550
[exp]
0 1
Potri.017G046301
[exp]
1.73 0.8946
Potri.001G426850
[exp]
3.00 0.9224
AT5G61620 MYB myb-like transcription factor ... Potri.001G080300
[exp]
4.24 0.9046
AT2G32990 ATGH9B8 glycosyl hydrolase 9B8 (.1) Potri.001G356000
[exp]
7.48 0.7621
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.003G211866
[exp]
8.12 0.8917
AT1G70500 Pectin lyase-like superfamily ... Potri.015G088600
[exp]
9.94 0.8917
AT5G55180 O-Glycosyl hydrolases family 1... Potri.016G135900
[exp]
10.48 0.8917
AT4G02270 RHS13 root hair specific 13 (.1) Potri.002G201800
[exp]
14.69 0.7976
AT1G64870 unknown protein Potri.014G054900
[exp]
15.09 0.7967
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Potri.006G186000
[exp]
25.69 0.8152

Potri.018G001550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.