Plant FIBer expression Database

Potri.018G001700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G001700.3 pacid=42801762 polypeptide=Potri.018G001700.3.p locus=Potri.018G001700 ID=Potri.018G001700.3.v4.1 annot-version=v4.1
ATGTATCCGGATGATGCTCGATCCTATGATGCAGGAGACGATCATCCATCCCTGGATGCTTCTGAGATACCAACTTTTTTCAAAACCATGGTGCCCACTG
TTGCTCGAATCTATAATGTTTTTGAATCCGGCACGCTATCCTTGTTTGCAGCTGGTGTTGTGATCTCACCTTATGGCCACATCCTTACTATCAACACCGA
CACCGGCACTAACAGAACAGGAATGCATGTTTGTTTTAAAGATGATGATGAAGGATTCAAGGCGGCTATCTGTCATGAATATGCTGATCATCCTTTTTTA
TTGCTCAAGTTGGAGTCAGAGAGGGAGGACTTTCCCTATGCACGCCTCGCTACCTCTGCAGCTGTACATGGCAGTGAGATTCATTTTATTCATGTCTTTT
TTAATAATGCGTATCGATATCTTAAAGGAATGGTTTCATGTCCGAACAGAAACTTGTCATCTGTTATCATGAGTAAAGAAGTGCAACAAATAGTTGCACC
TAGCATTAAGCATGCTTATCACAATAGAGTTCCGATACAATTTGTGGAGGTAGGAGCTATTTATGGCAGCGAGCATGTGTGTGGCACCCCATTTTTTGGC
AAGAATGGGACTGTTGTTGGCATCTACTATTTCAGTGCCTTTAATCTAGCTTATGGATTTAATCTGGATTACCTGGAGACGATGTCTCCTGCTTGGGAGG
AAAAGATAACCGAGTGTCAACCAGCAAGGCGGACCAAACTTACCTCCGACGGATTGGCCTCCGGTTCTCAATCTGGGGGGCAGCGTGCTATGTAA
AA sequence
>Potri.018G001700.3 pacid=42801762 polypeptide=Potri.018G001700.3.p locus=Potri.018G001700 ID=Potri.018G001700.3.v4.1 annot-version=v4.1
MYPDDARSYDAGDDHPSLDASEIPTFFKTMVPTVARIYNVFESGTLSLFAAGVVISPYGHILTINTDTGTNRTGMHVCFKDDDEGFKAAICHEYADHPFL
LLKLESEREDFPYARLATSAAVHGSEIHFIHVFFNNAYRYLKGMVSCPNRNLSSVIMSKEVQQIVAPSIKHAYHNRVPIQFVEVGAIYGSEHVCGTPFFG
KNGTVVGIYYFSAFNLAYGFNLDYLETMSPAWEEKITECQPARRTKLTSDGLASGSQSGGQRAM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G001700
[exp]
0 1
Potri.008G165950
[exp]
3.46 0.7999
AT2G24400 SAUR-like auxin-responsive pro... Potri.006G278100
[exp]
7.54 0.8004
AT2G01050 zinc ion binding;nucleic acid ... Potri.017G002400
[exp]
9.16 0.7699
AT1G21340 DOF AtDof1,2 Dof-type zinc finger DNA-bindi... Potri.005G188900
[exp]
11.00 0.7711
AT2G01050 zinc ion binding;nucleic acid ... Potri.017G002501
[exp]
17.23 0.7590
Potri.019G129466
[exp]
21.35 0.7871
AT2G07560 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase... Potri.001G048300
[exp]
28.84 0.7433 Pt-HA1.2
AT5G56540 ATAGP14, AGP14 arabinogalactan protein 14 (.1... Potri.019G035500
[exp]
46.43 0.7584
AT5G06800 GARP myb-like HTH transcriptional r... Potri.016G048000
[exp]
51.26 0.7099
AT5G58330 lactate/malate dehydrogenase f... Potri.010G230000
[exp]
58.88 0.7546

Potri.018G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.