Plant FIBer expression Database

Potri.018G002000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31200 620 / 0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G279800
[exp]
885 / 0 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Potri.012G058100
[exp]
50 / 4e-06 AT5G23080 837 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016927
[exp]
687 / 0 AT4G31200 587 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Lus10008260
[exp]
684 / 0 AT4G31200 586 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Lus10009612
[exp]
52 / 2e-06 AT5G23080 835 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Lus10000866
[exp]
52 / 2e-06 AT5G23080 829 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01805 Surp Surp module
CL0020 TPR PF04818 CID CID domain
Representative CDS sequence
>Potri.018G002000.2 pacid=42802007 polypeptide=Potri.018G002000.2.p locus=Potri.018G002000 ID=Potri.018G002000.2.v4.1 annot-version=v4.1
ATGGATAGGCAACCGCCGCCTCCGCCCCATGATTATGCCGCAATGGCATATGCTCAGCAGCAGCAGCAGCAGCAGCCACAATATGGATATCCTCCTCCTC
CACATCAACACCAACAATACCCTCCCCCACCTAATCCATTTATGCCTCCTCCTCATCCTTCAGTGCAGCAATATCCCTACACTCAACCTCCTCCACACCC
TCACCATCTTCAACACCCGCCACAGCAACAGCAGCACCCTCCACCTTTTGCACCACATTTACCGCCTCACCTTATACCTCCACCTTTTCATACTCCTAAT
TATGATTCTCCCCCACCTCCGGTTCCGCCTCCATCTGATCCTGAGCTTCAGAAACGTATAGATAAGCTTGTTGAGTATGCCACAAAGAATGGGCCGGAAT
TTGAAGTCATGATCCGTGAAAAACAGCAGGATAATCCTGCTTATAGTTTCCTTTTTGGAGGAGAGGGTCATGCATATTATCGGTATAAGCTTTGGTTATC
TACGCGTGGTCCTCTCAATCCTCCTTTCCAAGCATCTTCTATGATGCATCCACCACCAAACCCAATGATGAATGCCACTGTTGGGCCTCCTCCTCAAATG
CACCAACCTTCTTTTCCACCTTTTTATGATCACCATCACCAGCACACTCCACAGCCCTTTGGTGTTCATAGTAGATCAGATTTTGATCAACCATCCAAGT
CCTTTAAAGGACTCTCTGGTCCACTTCCTCCTGATGTTGCAGTGGAACTCAGTAATGTGCTTAACACTCTAAATGGTACCAAGGAGTCTATCAAAGGGGC
CAAGACTTGGTTCATGCAAAGGTCTCCATTTGCACCAGCTCTTGCTGAAGCACTTAGGGACAGGATTTTTTCTCTGGATGATTCTGAGAGGCAATTGCAC
ATCATCTATCTCGCCAATGATATTCTTTTTGACAGTTTGCAAAGGAGAATTAATCCCCATGATCTTGATAATGAAGCCCTTGCATTTAAGCCTGTGCTAG
GTTCCATGCTTGCAAGGATTTATCACTACCCTCAGAATAAGGATGAAAACCAGTCGCGGTTGCAGAAAATTCTGCAGTTCTGGGCCTCGAAGGAGGTCTA
TGATCAAGATACCATTTATAAACTTGAAGGTGAGATGGTTAGCGGACCACCAGTAAATTCTTTTCCAGGGCCTCCAAAAGAATTATCTACTGGCTCAACA
GATTCCGTGCCTGCTGCAGGCTTTACTCAACACGCAACAAGCCACAATGCTCCACAATGGCCACCTGATAGGCAAAGTGTACCAGATCAGGAGCATCTTG
ATAAACAAATGCTGCCCGTCATGCTTCCAACCCTTGGAAATCAGCAATTTATTCCAAATCCAGTCCCTGCTGCTACTTTTCCAGGTTCCCTGCCCATAAA
TTCTTCTGTTCTGCCAGCAGGTCAACAACCCGCACCACATTTATTGCAAGCACCTCCTGCTAACATTGCTGAAAACTTGTCACCATATCCCCTGTTCCCA
CCCGGTCTTATTCCTGGAATGGTCAGAAAGATGCAGATTGGCAGTGGGGTGCCCTACTCACCTTTGAGCCCTTTGGACATCCCGACAACCATACCCCCAT
CCAATGTACCCCCATCAGAAATTCTAGATAGAGTCTCAAAGTTTTTTAAAGAGATTGGAGAGGTTAACCCATCTGAGGGACCTATGAGAGCTGACCCAAA
AGATGAAGATGATGAGTATGAGAGAGAGTCTCCCATTCGCAAGGGGGGAGCTTGCATCCCTCCTCCCCCAAACTTACAGGTTGAGCCAGAGACAGGAGCT
TATGCAGATGGAAGTGTGGAGCGGAAACATGGAACTGGCTCGGGAAGATTGGGACTTGGGGCAACAGCCGATCCTAACGAGCCAAGTCAATACGACGATG
TTTACACATCTTACAGGAAACAGAGAAGCACCAACTATCACTCATCCATGAGTGTAAGGGCTGCTACTAGGTAG
AA sequence
>Potri.018G002000.2 pacid=42802007 polypeptide=Potri.018G002000.2.p locus=Potri.018G002000 ID=Potri.018G002000.2.v4.1 annot-version=v4.1
MDRQPPPPPHDYAAMAYAQQQQQQQPQYGYPPPPHQHQQYPPPPNPFMPPPHPSVQQYPYTQPPPHPHHLQHPPQQQQHPPPFAPHLPPHLIPPPFHTPN
YDSPPPPVPPPSDPELQKRIDKLVEYATKNGPEFEVMIREKQQDNPAYSFLFGGEGHAYYRYKLWLSTRGPLNPPFQASSMMHPPPNPMMNATVGPPPQM
HQPSFPPFYDHHHQHTPQPFGVHSRSDFDQPSKSFKGLSGPLPPDVAVELSNVLNTLNGTKESIKGAKTWFMQRSPFAPALAEALRDRIFSLDDSERQLH
IIYLANDILFDSLQRRINPHDLDNEALAFKPVLGSMLARIYHYPQNKDENQSRLQKILQFWASKEVYDQDTIYKLEGEMVSGPPVNSFPGPPKELSTGST
DSVPAAGFTQHATSHNAPQWPPDRQSVPDQEHLDKQMLPVMLPTLGNQQFIPNPVPAATFPGSLPINSSVLPAGQQPAPHLLQAPPANIAENLSPYPLFP
PGLIPGMVRKMQIGSGVPYSPLSPLDIPTTIPPSNVPPSEILDRVSKFFKEIGEVNPSEGPMRADPKDEDDEYERESPIRKGGACIPPPPNLQVEPETGA
YADGSVERKHGTGSGRLGLGATADPNEPSQYDDVYTSYRKQRSTNYHSSMSVRAATR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31200 SWAP (Suppressor-of-White-APri... Potri.018G002000
[exp]
0 1
AT4G15410 PUX5, ATB' GAMM... serine/threonine protein phosp... Potri.002G225800
[exp]
1.41 0.8509
AT3G16310 mitotic phosphoprotein N' end ... Potri.001G188300
[exp]
3.87 0.8408
AT3G26990 ENTH/VHS family protein (.1) Potri.001G325700
[exp]
5.00 0.8558
AT4G08960 phosphotyrosyl phosphatase act... Potri.005G162900
[exp]
5.83 0.7764
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.005G148500
[exp]
8.83 0.8143
AT5G20070 ATNUDX19, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.006G154200
[exp]
16.30 0.8113
AT2G31240 Tetratricopeptide repeat (TPR)... Potri.005G222900
[exp]
17.32 0.8457
Potri.007G074433
[exp]
20.19 0.8406
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Potri.009G041400
[exp]
22.13 0.8393
AT1G27090 glycine-rich protein (.1) Potri.010G034900
[exp]
22.58 0.8251

Potri.018G002000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.