Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17370 462 / 6e-162 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 447 / 1e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 446 / 2e-155 UBP1A oligouridylate-binding protein 1A (.1.2) AT5G19350 144 / 7e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 133 / 2e-34 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 132 / 4e-34 ATRBP47A RNA-binding protein 47A (.1) AT5G54900 130 / 1e-33 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 129 / 4e-33 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 123 / 4e-31 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 123 / 5e-31 ATRBP47C RNA-binding protein 47C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279600 [exp] 634 / 0 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.006G139300 [exp] 490 / 6e-173 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 484 / 1e-170 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 483 / 5e-170 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.009G054400 [exp] 145 / 7e-39 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G105300 [exp] 134 / 1e-34 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 132 / 3e-34 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 132 / 3e-34 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.011G138400 [exp] 129 / 3e-33 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011924 [exp] 475 / 5e-167 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 472 / 1e-165 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 471 / 1e-165 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10036435 [exp] 442 / 8e-149 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10041109 [exp] 394 / 3e-135 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10013167 [exp] 390 / 3e-134 AT1G17370 575 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10031844 [exp] 144 / 2e-38 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 144 / 2e-38 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 137 / 4e-36 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 134 / 6e-35 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.018G002300.1 pacid=42801954 polypeptide=Potri.018G002300.1.p locus=Potri.018G002300 ID=Potri.018G002300.1.v4.1 annot-version=v4.1 ATGCAACAGCAAGCACTGCTTCAACATCATCACATGTATCATCATCCTGCTCTCGTCGCTTCTGCCATGTCTCAGATGGAGCCTATCCTTGGTGGTAATC TGCCTCCTGCTTTTGATCCTTCTTCTTCTTGTCGCAGAGTTTATGTAGGAAATATTCATGTAAACGTCACTGACAAACTTCTTGCTGAAGTTTTCGCAAC TGCTGGCCCTCTTGCTGGATGCAAGCTCATCAGAAAGGATAAGTCATCATACGGTTTTGTGGACTACCATGACCAATCATCTGCAGCACTTGCAATAATG ACATTGCATGGACGCCAACTTTATGGTCAGGCGCTTAAAGTGAATTGGGCATATGGCAATAGCCAAAGGGAGGATACATCAGGGCATTTCCATGTATTTG TTGGTGATTTGAGTCCAGAGGTTATTGATGCTAATTTATTTGCGTGCTTCTCAGTCTTTCCTAGTTGCTCCAATGCAAGGGTCATGTGGGATCACAAAAC TGGCCGCTCGAAAGGATATGGCTTTGTTTCATTCCGTAATCAGCAGGAGGCACAAAGTGCTATTAATGACTTAACTGGTAAATGGCTCGGAAACAGGCAG ATAAGATGTAATTGGGCAACTAAAGGTGTTGAATCCAATGAAGATAAGCAAAACAGTGATAACCAGAATGCAGTTGTACTTACTAATGGATCTTCAGAAG GTGGTCAGGAAAGCACAAATGAGGAGGCTCCTGAAAACAATCCTGCATACACCACTGTCTATGTTGGCAATCTTTCCCATGAGGTCACCCAAGCTGAGCT GCATCGTCATTTTCATGCTCTTGGGGCTGGTGTAATTGAGGATGTTCGAGTCCAGAGAGATAAAGGTTTTGGGTTTGTCAGATACAACACTCATGAAGAA GCAGCCTCAGCCATTCAAACGGGCAATGGGAAGATAGTTTGTGGAAAGCCCGTGAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCAA ATCCATTGCCACCTCCACCTCCAGCTCAACCATATCAAATTGCTCCATCAACTGGTATAAACCAAGGCTACTCTGCAGCTGATTTGTTGGCCTATCAGCG CCAACTTGCCTTGAGCCAGGCTGCTGCATCCGGCCTTTCAGGCCAAGCTCTTCTCCAGCTGGCCGGACAGCATGGCCTAGCTGCTGCTTCAATGGACTTG AGCGCTGGTGGGTCCCAAGCTATGTATGATGGATATCATAACGGTTTGGCAGCTCAGCAGCTCATGTATTACCGTTAG
AA sequence Show only first row Show all	>Potri.018G002300.1 pacid=42801954 polypeptide=Potri.018G002300.1.p locus=Potri.018G002300 ID=Potri.018G002300.1.v4.1 annot-version=v4.1 MQQQALLQHHHMYHHPALVASAMSQMEPILGGNLPPAFDPSSSCRRVYVGNIHVNVTDKLLAEVFATAGPLAGCKLIRKDKSSYGFVDYHDQSSAALAIM TLHGRQLYGQALKVNWAYGNSQREDTSGHFHVFVGDLSPEVIDANLFACFSVFPSCSNARVMWDHKTGRSKGYGFVSFRNQQEAQSAINDLTGKWLGNRQ IRCNWATKGVESNEDKQNSDNQNAVVLTNGSSEGGQESTNEEAPENNPAYTTVYVGNLSHEVTQAELHRHFHALGAGVIEDVRVQRDKGFGFVRYNTHEE AASAIQTGNGKIVCGKPVKCSWGSKPTPPGTASNPLPPPPPAQPYQIAPSTGINQGYSAADLLAYQRQLALSQAAASGLSGQALLQLAGQHGLAAASMDL SAGGSQAMYDGYHNGLAAQQLMYYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.018G002300 [exp]	0	1
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Potri.006G026900 [exp]	6.32	0.8865
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.011G000900 [exp]	10.00	0.8524
AT5G22850			Eukaryotic aspartyl protease f...		Potri.009G001700 [exp]	10.86	0.8231
AT3G49550			unknown protein		Potri.012G004900 [exp]	14.83	0.8689
AT5G59410			Rab5-interacting family protei...		Potri.009G032100 [exp]	16.67	0.8824
AT1G53290			Galactosyltransferase family p...		Potri.001G392700 [exp]	22.58	0.8718
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	33.31	0.8466
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	44.60	0.8583
AT5G60580			RING/U-box superfamily protein...		Potri.006G024000 [exp]	45.43	0.8567
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Potri.005G110700 [exp]	47.74	0.8568	Pt-RHO1.2

Compare expression of checked genes

Potri.018G002300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.