Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20190 540 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 540 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 443 / 1e-147 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 402 / 4e-132 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT1G50610 395 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 309 / 3e-96 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G58300 293 / 3e-90 Leucine-rich repeat protein kinase family protein (.1.2) AT5G20690 284 / 1e-86 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 273 / 3e-83 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 271 / 6e-82 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279300 [exp] 995 / 0 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 603 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 589 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 587 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 575 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 405 / 7e-137 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 382 / 2e-124 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 328 / 7e-104 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 328 / 2e-103 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026988 [exp] 672 / 0 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 648 / 0 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 405 / 3e-135 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 388 / 9e-131 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 375 / 2e-121 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 375 / 8e-121 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 369 / 1e-118 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 364 / 3e-117 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 360 / 8e-115 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 337 / 7e-109 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G002600.1 pacid=42800697 polypeptide=Potri.018G002600.1.p locus=Potri.018G002600 ID=Potri.018G002600.1.v4.1 annot-version=v4.1 ATGGCTCATAAGGTAGCTTGTTGGCACCTCATGATGCTGCTATTTTACTTTTTGGTCACGGCGAGCCAATTTTTTGTGACATCACACGGTGCAAGTACTG ATGCTGAAATCCTCGTCAACTTCAAGAACTCCTTGTCTACAAACTCCTTGCTCTACGATTGGAATGCGTCAGGCATTCCTCCGTGCACCGGTGGCACTGA CAATTGGGTTGGTTTGCGTTGCAACAATGATAGCACGATCGATAAGTTGTTGCTTGAGAATATGGGCTTAAAGGGTACCATTGACATAGACATCTTGATG CAATTGCCAACGTTGAGAACGTTAAGCTTCATGAATAATAGCTTTGAGGGTCCAATGCCTGAAGTGAAAAAACTTAGTTCCTTGAGAAACTTGTATTTGT CCAACAACAATTTCTCAGGAAAAATTGACAAGGATGCATTTGACGGAATGAGTTCGTTGAAGGAAGTTTATTTGGCACATAATGAGTTTACTGGTGAAAT TCCTAGATCACTTGTTTTGGTGCAGAAGCTAACAAAGTTGAGCCTTGAAGGGAATCAATTTGATGGGAACTTGCCTGATTTCCCTCAAGAAAACTTGACT GTGTTTAATGCTGCAGGTAACAATTTCAAGGGTCAGATACCTACCAGCCTTGCTGACTTCAGTCCAAGCTCTTTTGCAGGGAATCAAGGGTTATGTGGAA AGCCACTGCCTGCATGCAAATCATCCAGGAAAAAGACCGTCGTAATTATTGTGGTCGTTGTTGTATCTGTGGTTGCATTATCTGCTATTGTTGTCTTTGC CTGCATCCGCAGCCGCCAAAACAAAACACTCAAATTTAAGGATACCAAAAAGAAATTTGGTGATGATAAAAAGGAAGCTCAATCATCAGATCAGTTTGGT GATGGTAAAATGGGTGATAGTGGGCAGAACTTGCATTTCGTAAGATATGATAGGAATAGATTTGATTTGCAAGACCTCCTTAGGGCCTCTGCTGAGGTCC TGGGCAGTGGTACTTTTGGGTCATCTTATAAGGCAGTTCTTTTAGATGGGCCTGCTATGGTTGTGAAGAGGTTTAGGCATATGAGTAATGTAGGTAAGGA AGGATTTCATGAGCACATGAGAAAGTTAGGAACATTGTCACACCCTAACTTGCTCCCTCTAGTGGCATACTACTACAGAAAAGAAGAAAAGCTTTTGGTC TCTGACTTCGTTGGAAATGGCAGCTTGGCTTCTCATCTTCATGGTAAGCGTTCCCCGGGAAAACCATGGATTGACTGGCCAACTCGGCTGAGGATCATCA AAGGTGTTGCCAAGGGGTTGGCCTATCTCTACAAGGAGTTTCCAACATTAGCTTTGCCTCATGGTCACCTAAAATCCTCCAACGTTCTTCTAGATGATAC ATTCGAGCCCCTCTTGACAGATTATGCCCTAGTTCCTGTGGTTAATAAAGACCATTCTCAACAAGTTATGGTTGCCTACAAGTCGCCTGAATGCTCTCAA TCCGACCGTCCGAATAGGAAGACTGATGTGTGGAGTCTTGGTATACTAATTCTGGAAATCTTGACAGGCAAGTTCCCTGAAAATTATCTAACGCAAGGAA AGGGCGGTGATGCAGATTTGGCAACTTGGGTTAACTCAGTTGTTAGAGAAGAGTGGACAGGAGAGGTATTTGATATGGATATGATGAGGACCAAGAATTG CGAGGGTGAAATGCTAAAGCTGTTGAAAATTGGGATGTGCTGCTGTGAATGGAATTTGGAGAGGAGGTGGGATTTGAAGGTGGCTGTAGCCAAAATTGAG GAATTGAAGGAGAGAGACAATGACAATGATGACTTCAGTAATTCCTATGCAAGTGAAGGTGAAGTCTATTCTTCTAGAGCAGTGACTGATGATGATTTCT CCTTCTCAGTCAATGGTTGA
AA sequence Show only first row Show all	>Potri.018G002600.1 pacid=42800697 polypeptide=Potri.018G002600.1.p locus=Potri.018G002600 ID=Potri.018G002600.1.v4.1 annot-version=v4.1 MAHKVACWHLMMLLFYFLVTASQFFVTSHGASTDAEILVNFKNSLSTNSLLYDWNASGIPPCTGGTDNWVGLRCNNDSTIDKLLLENMGLKGTIDIDILM QLPTLRTLSFMNNSFEGPMPEVKKLSSLRNLYLSNNNFSGKIDKDAFDGMSSLKEVYLAHNEFTGEIPRSLVLVQKLTKLSLEGNQFDGNLPDFPQENLT VFNAAGNNFKGQIPTSLADFSPSSFAGNQGLCGKPLPACKSSRKKTVVIIVVVVVSVVALSAIVVFACIRSRQNKTLKFKDTKKKFGDDKKEAQSSDQFG DGKMGDSGQNLHFVRYDRNRFDLQDLLRASAEVLGSGTFGSSYKAVLLDGPAMVVKRFRHMSNVGKEGFHEHMRKLGTLSHPNLLPLVAYYYRKEEKLLV SDFVGNGSLASHLHGKRSPGKPWIDWPTRLRIIKGVAKGLAYLYKEFPTLALPHGHLKSSNVLLDDTFEPLLTDYALVPVVNKDHSQQVMVAYKSPECSQ SDRPNRKTDVWSLGILILEILTGKFPENYLTQGKGGDADLATWVNSVVREEWTGEVFDMDMMRTKNCEGEMLKLLKIGMCCCEWNLERRWDLKVAVAKIE ELKERDNDNDDFSNSYASEGEVYSSRAVTDDDFSFSVNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20190			Leucine-rich repeat protein ki...		Potri.018G002600 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	4.79	0.9952	3
					Potri.005G130750 [exp]	7.34	0.9943
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	10.09	0.9940
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	12.80	0.9931
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	13.49	0.9923
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	14.69	0.9928
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.005G120901 [exp]	15.87	0.9870
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	15.87	0.9898
					Potri.005G193200 [exp]	16.30	0.9679
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	16.49	0.9921	CHI3.4

Compare expression of checked genes

Potri.018G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.