Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21080 447 / 9e-156 unknown protein AT3G20300 231 / 6e-71 Protein of unknown function (DUF3537) (.1) AT1G50630 223 / 2e-67 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 194 / 8e-57 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT4G03820 188 / 2e-54 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT1G67570 170 / 1e-47 Protein of unknown function (DUF3537) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279200 [exp] 737 / 0 AT2G21080 453 / 6e-158 unknown protein Potri.001G356200 [exp] 241 / 1e-74 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 166 / 2e-46 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 165 / 8e-46 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 157 / 4e-43 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036448 [exp] 480 / 3e-168 AT2G21080 450 / 5e-157 unknown protein Lus10002334 [exp] 258 / 2e-81 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 256 / 4e-78 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 214 / 3e-64 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 197 / 9e-58 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10011371 [exp] 168 / 6e-47 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 157 / 7e-43 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 122 / 1e-30 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 118 / 1e-28 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032512 [exp] 56 / 2e-09 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [poplar] [flax] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Potri.018G002700.1 pacid=42801624 polypeptide=Potri.018G002700.1.p locus=Potri.018G002700 ID=Potri.018G002700.1.v4.1 annot-version=v4.1 ATGATCAACAACACCTCTACCACTTCTGGCGATACCCTTATAGATGCTCATTGCTCCGGTCCGCATGTAACGTTCACCAAGGAAAACGATCAATCAGACC AGCTGCAGGCTAATGTACCCCTGTTACTTCAACCTTCATATGCTAGATCAAAATCACTACTCTTCGATGAGCTACGCAATTTCCGAATGAGCCTTAGATG GTGTGCACTTGATCATTCCTCTTGCATAGGAAAAACTGTGTCCTACTTTGTTTTCATTTTCCTTGCCATTATTGTCCCGATTGTAAGCTCCCTCTCCATT AGAGTCCCATCCTCAGCACCAGCTGACGACCCTATTTCTTACAACAAGCTGGTGCAGGTTCCTGAGTCTGCCTTGGCTTTTATAGCTTTCTTTACTCTTT TCCGTTTCTTTAAGAGATACGGTCTCCGCCAGCTCTTGTTCCTCGATGGCTTACAGGATGACTCGTTGTTCGTTAGACAAGGATACTCGCGCGAGCTCGA TAAGGCTTTTCGGTACCTAGCCTGCATATTGCTTCCATCTTTCTTTGTCGAACTTGCACACAAAATCATATTTTTCTCCACAGTCAAAATATGGTTACCT TATAATATTAGTCCTCACGGTATTCCATTGAATTCCATCATGTTTGTGTTGGTGCTGGCGTCTTGGGTTTATAGGACAGGAGTGTTCTTGTTGGTTTGTG TCCTGTTTCGGTTGACTTGTGAGCTTCAGATACTCAGATTTGAAGGGCTTCATAAGTTGTTTGAGGGTTGTGGATCCGGTGCCGGTGTCATATTCAGGGA GCATGTTAGGATTAAGAAACAATTATCTCTTACAAGCCATAGATATCGATTCTTTATCATATCCTGTTTGGTTACCATTACAGTTAGTCAATTTGGAGCA TTGTTGCTGGTTTTGGGATTCAACACTCAGAAGAGTTTCTTCAATTCCGGAGACCTTGTGATATGTTCAGCAGTTCAACTAAGTGGATTCTTCTTATGTT TACTTGGAGCTGCAAGAATTACACATAGAGCTCAAGGTATTGTGTCAATAGCCACTAGATGGCATATGAATGTTACATCTGCATTTGCCAGGGTAGACCA GGGAAAAAACCATGTGCTGGAAGCTGATGGGAGTCTAGCATTCAATGCTGGAGACAGCGAGTCCGATTCTTCGGACTTTTTCATTGCAATTTCCTCACAG GATCCATGCACCTTCCAAACCAGGCAGGCTTTAGTGGCTTATTTGCAACACAACAATGGGGGGATCACACTGTTTGGATTTGCACTTGATCGAGGATTGC TTCATACACTCTTTGCTTTTGAGTTCTCTTTGGGGATGTGGATTATGAGTAAAGTGGTGGTTTTGTCTTAA
AA sequence Show only first row Show all	>Potri.018G002700.1 pacid=42801624 polypeptide=Potri.018G002700.1.p locus=Potri.018G002700 ID=Potri.018G002700.1.v4.1 annot-version=v4.1 MINNTSTTSGDTLIDAHCSGPHVTFTKENDQSDQLQANVPLLLQPSYARSKSLLFDELRNFRMSLRWCALDHSSCIGKTVSYFVFIFLAIIVPIVSSLSI RVPSSAPADDPISYNKLVQVPESALAFIAFFTLFRFFKRYGLRQLLFLDGLQDDSLFVRQGYSRELDKAFRYLACILLPSFFVELAHKIIFFSTVKIWLP YNISPHGIPLNSIMFVLVLASWVYRTGVFLLVCVLFRLTCELQILRFEGLHKLFEGCGSGAGVIFREHVRIKKQLSLTSHRYRFFIISCLVTITVSQFGA LLLVLGFNTQKSFFNSGDLVICSAVQLSGFFLCLLGAARITHRAQGIVSIATRWHMNVTSAFARVDQGKNHVLEADGSLAFNAGDSESDSSDFFIAISSQ DPCTFQTRQALVAYLQHNNGGITLFGFALDRGLLHTLFAFEFSLGMWIMSKVVVLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21080			unknown protein		Potri.018G002700 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256700 [exp]	1.41	0.9882
AT1G77700			Pathogenesis-related thaumatin...		Potri.001G210400 [exp]	4.24	0.9836
					Potri.001G393001 [exp]	6.00	0.9808
					Potri.007G038000 [exp]	6.32	0.9620
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	7.07	0.9786
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G012000 [exp]	7.93	0.9771
AT1G63310			unknown protein		Potri.001G452900 [exp]	8.71	0.9803
					Potri.018G040000 [exp]	9.16	0.9785
AT3G62290		ATARFA1E	ADP-ribosylation factor A1E (....		Potri.001G301200 [exp]	11.53	0.9622
AT5G35740			Carbohydrate-binding X8 domain...		Potri.006G016800 [exp]	12.32	0.9755

Compare expression of checked genes

Potri.018G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.