Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31270 153 / 6e-43 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G33550 62 / 1e-10 Trihelix Homeodomain-like superfamily protein (.1) AT2G35640 43 / 0.0004 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279100 [exp] 598 / 0 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.015G105800 [exp] 64 / 5e-11 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 59 / 2e-09 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1) Potri.001G066900 [exp] 58 / 5e-09 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026986 [exp] 139 / 2e-36 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10020182 [exp] 134 / 1e-34 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1) Lus10041120 [exp] 108 / 3e-26 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G002801.1 pacid=42801139 polypeptide=Potri.018G002801.1.p locus=Potri.018G002801 ID=Potri.018G002801.1.v4.1 annot-version=v4.1 ATGGAGGCAACACAATCAATCACAGCAATTAATAATAAGAAGCGGAAAAAGGGAAATCAAGACTGTAAGAATAGTAATTCATCTCGTGTTTTGAGCACTC CGCGAACGCGTTCTCAGGTATCCCCGGAGTGGACTGCTAAACAAGCACTCATTCTAGTGAATGAGATTGCTGCTGTTGAAAAGGATTGCTCAAAAGCGGT ATCGACCAATCAGAAATGGAAGATCATTGTTGGTAACTGCGTTGCGCTGGGTGTAACGCATCCTCTGAGTCAGTGCCGGAGTAAGTGGAACTCTTTGGTT ATCGAGTACAACCAGATTAAAAAATGGGATAAAGAGTCCGAGTCGCGGAGTGACTTCTACTGGTCTCTGGGATGTGAAAGGAGAAAGGAATTTGGACTTC CGGAGAATTTTGATGATGAGCTGTTCAAAGCTATTGATGATTATATGTGGAGCCAGAAGGAACAGCTGGATACGGATCCAGATACCGACCTTCAAAAGGC TGACTTGCTTGATGTAATTGCAAACTTGGGGGCCAAGAAACAAAGGAAGTGGTTAACATCTCTGAAAACCCACACGGAAGAAAAGACTCACAAATGCTGC AGAAAGGAAAACTCTCAAACAATCCACGCAGAAGAAGAGCCTCAGAAAAGACACGAGGAAGAAAATTCTCAGATATACTGCACTATGGAAAAGCCTCATG GATTCCATGCTGAAGAAGAATGTCAGGAAAGTCAGGTGCAAGAAAACACTCAGACATGCTGTGCTGAAGGAAAGCTTCAAACAATCCATGCAGAAGACGA TCCTTGGGAAAGTTGCGCAGAAGAAGAGCCTCATACAATCCATGCAGAAGAGTGGCTGCAGCCATGCTGCTCAAAGGAAAAGCCTCAGACAATCCATGTA CAAGAGGAAAATCAAGAAAGATATGTGGAAGAAAACCATCAGACATGCTGCACAAAGGAAAAGCCTCAGACAATCCCTGCAGAAGAGGAACTTCACGAAA TTCAAGTGAAAGAAAAGCCTCAAAAGCGACTTAGAAAAGAGAAACCTCAAATTGGCAACGGGGATGAAAAGCCTAAAATCTACAGCGGACGGAAAAAAAT GCCCAGCACAGAAGATATGGAGCAAATGATGGTGGAAAAACTCAGTGAGAATGCTGAAATGATCCAGGCTGTAGTTAATGGCAACCTTCCTGAGATGGCA GACCTCGAAGCTGCTGATTCAAACAATATCGAGGGCTTCAAAAATGATCTTATAAGAAGTCAAGGGGACAAGCTTATTGCATGCCTTGAAAATATTGTCA ACACTATGAGGCAGTTCCCTTGGCTTCTCCAAGATGCAACTAGTTGA
AA sequence Show only first row Show all	>Potri.018G002801.1 pacid=42801139 polypeptide=Potri.018G002801.1.p locus=Potri.018G002801 ID=Potri.018G002801.1.v4.1 annot-version=v4.1 MEATQSITAINNKKRKKGNQDCKNSNSSRVLSTPRTRSQVSPEWTAKQALILVNEIAAVEKDCSKAVSTNQKWKIIVGNCVALGVTHPLSQCRSKWNSLV IEYNQIKKWDKESESRSDFYWSLGCERRKEFGLPENFDDELFKAIDDYMWSQKEQLDTDPDTDLQKADLLDVIANLGAKKQRKWLTSLKTHTEEKTHKCC RKENSQTIHAEEEPQKRHEEENSQIYCTMEKPHGFHAEEECQESQVQENTQTCCAEGKLQTIHAEDDPWESCAEEEPHTIHAEEWLQPCCSKEKPQTIHV QEENQERYVEENHQTCCTKEKPQTIPAEEELHEIQVKEKPQKRLRKEKPQIGNGDEKPKIYSGRKKMPSTEDMEQMMVEKLSENAEMIQAVVNGNLPEMA DLEAADSNNIEGFKNDLIRSQGDKLIACLENIVNTMRQFPWLLQDATS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.018G002801 [exp]	0	1
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	9.59	0.7035	ATHK1.3
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.008G131500 [exp]	13.71	0.6964
AT4G27220			NB-ARC domain-containing disea...		Potri.019G009198 [exp]	16.43	0.6769
AT2G40570			initiator tRNA phosphoribosyl ...		Potri.018G087300 [exp]	28.61	0.6163
AT1G05960			ARM repeat superfamily protein...		Potri.007G128000 [exp]	28.84	0.6313
AT5G47940			unknown protein		Potri.009G060000 [exp]	33.40	0.6746
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Potri.002G041200 [exp]	35.70	0.5790	LBD16.2
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.011G024700 [exp]	44.59	0.6258	ATPC1.2
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G222500 [exp]	45.27	0.5953
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	45.67	0.6546

Compare expression of checked genes

Potri.018G002801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.