Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31290 331 / 2e-116 ChaC-like family protein (.1) AT5G26220 325 / 2e-114 ChaC-like family protein (.1) AT1G44790 197 / 7e-64 ChaC-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279000 [exp] 434 / 4e-157 AT4G31290 327 / 5e-115 ChaC-like family protein (.1) Potri.005G176300 [exp] 210 / 3e-69 AT1G44790 289 / 9e-101 ChaC-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020181 [exp] 356 / 4e-126 AT4G31290 342 / 2e-120 ChaC-like family protein (.1) Lus10026985 [exp] 345 / 2e-121 AT4G31290 332 / 5e-116 ChaC-like family protein (.1) Lus10003737 [exp] 197 / 2e-63 AT1G44790 275 / 2e-94 ChaC-like family protein (.1) Lus10028029 [exp] 182 / 3e-57 AT1G44790 257 / 4e-87 ChaC-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [poplar] [flax] AIG2 PF04752 [poplar] [flax] ChaC ChaC-like protein
Representative CDS sequence Show only first row Show all	>Potri.018G002900.3 pacid=42801278 polypeptide=Potri.018G002900.3.p locus=Potri.018G002900 ID=Potri.018G002900.3.v4.1 annot-version=v4.1 ATGGTTTTCTGGATTTTTGGCTATGGTTCATTGGTGTGGAACCCAGGTTTTGAATATGATGAGAAAGTGATTGGATTTATCAAGGACTACAGGCGTGTCT TTGATCTTGCGTGCATTGATCACAGAGGTACACCTGAGAGTCCTGCAAGAACTTGCACGCTGGAAAATGTTGAAGGAGCTATTTGCTGGGGAGCTGCCTA TTGTGTACGGGGAGGTCCTGAAAGGGAAAGATTAGCTATGGAGTATTTGGAGAGGAGAGAATGCGAATATGATAAAAAGACCCTCGTAGACTTTTATAAG GAAGGGGAACCCTCACAACCTGCTTTAACTGGAGTTATAGTTTTCACATCGACTCCAGACCAGGTGTCAAACAAGTACTACCTCGGGCCTGCCCCTTTGG AGGAAATGGCTAGGCAAATTGCAACTGCTCATGGACCATGTGGGAACAACAGAGACTATCTCTTCCTGCTAGAAAAAGCCATGTTTGCGATCGGTCATGA GGACGAGATGGTGATAGAACTAGCAAAAGAAGTGAGGAAGGTTCTTGGAATTACAGGGAATGGTATTCCCACTGAGAAGAAGATAACTGGGACATCCCCG AAAGCGCTCATATCCCATATGCCAGTCCTTCAACTTCGTCCACTCCAAGAAGCCGTCGTAATGGACTCTTGA
AA sequence Show only first row Show all	>Potri.018G002900.3 pacid=42801278 polypeptide=Potri.018G002900.3.p locus=Potri.018G002900 ID=Potri.018G002900.3.v4.1 annot-version=v4.1 MVFWIFGYGSLVWNPGFEYDEKVIGFIKDYRRVFDLACIDHRGTPESPARTCTLENVEGAICWGAAYCVRGGPERERLAMEYLERRECEYDKKTLVDFYK EGEPSQPALTGVIVFTSTPDQVSNKYYLGPAPLEEMARQIATAHGPCGNNRDYLFLLEKAMFAIGHEDEMVIELAKEVRKVLGITGNGIPTEKKITGTSP KALISHMPVLQLRPLQEAVVMDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31290			ChaC-like family protein (.1)		Potri.018G002900 [exp]	0	1
AT1G48840			Plant protein of unknown funct...		Potri.015G046500 [exp]	22.84	0.6679
AT4G31290			ChaC-like family protein (.1)		Potri.006G279000 [exp]	38.72	0.5676
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.005G081200 [exp]	40.98	0.6520
AT3G27090			DCD (Development and Cell Deat...		Potri.001G330300 [exp]	56.68	0.6259
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.005G115800 [exp]	58.60	0.6380
AT2G31500		CPK24	calcium-dependent protein kina...		Potri.007G127000 [exp]	88.48	0.6073
AT3G51380		IQD20	IQ-domain 20 (.1)		Potri.005G106300 [exp]	119.58	0.5341
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.002G221000 [exp]	128.98	0.5882
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.009G121400 [exp]	147.96	0.5590
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G005900 [exp]	162.88	0.5660	Pt-AHA6.2

Compare expression of checked genes

Potri.018G002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.