Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16130 1660 / 0 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 1417 / 0 Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145700 [exp] 1464 / 0 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G138204 [exp] 1026 / 0 AT4G16130 1003 / 0.0 arabinose kinase (.1) Potri.018G138202 [exp] 191 / 7e-56 AT4G16130 179 / 2e-52 arabinose kinase (.1) Potri.008G102800 [exp] 66 / 8e-11 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.010G148100 [exp] 66 / 1e-10 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026983 [exp] 1009 / 0 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10020178 [exp] 624 / 0 AT4G16130 625 / 0.0 arabinose kinase (.1) Lus10037789 [exp] 59 / 1e-08 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016321 [exp] 48 / 2e-05 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0329 [poplar] [flax] S5 PF10509 [poplar] [flax] GalKase_gal_bdg Galactokinase galactose-binding signature CL0113 [poplar] [flax] GT-B PF13528 [poplar] [flax] Glyco_trans_1_3 Glycosyl transferase family 1
Representative CDS sequence Show only first row Show all	>Potri.018G003100.1 pacid=42801140 polypeptide=Potri.018G003100.1.p locus=Potri.018G003100 ID=Potri.018G003100.1.v4.1 annot-version=v4.1 ATGCGAATAGAGGAAAGCGATGGAGTATCGGCGTCGAGAAAGCACCTGGTGTTTGCCTATTATGTTACCGGTCATGGTTTTGGCCATGCCACTCGTGTTG TCGAGGTTGTTAGGAACTTGATTTTGGCTGGGCATGATGTGCACGTGGTCACTGGTGCACCTGATTTTGTCTTCACCTCTGAAATTCAGTCGCCTCGTCT CTTCATTCGCAAGGTATTATTGGACTGTGGAGCAGTACAGGCAGATGCATTGACCGTGGATCGCCTTGCGTCGTTGGAGAAGTATTCGGAGACGGCTGTG AAGCCCCGGGAATCTATTTTGGCTACTGAGATAGAGTGGCTGAACTCCATCAAAGCTGACTTAGTGGTTTCTGATGTTGTTCCAGTTGCGTGCCGTGCTG CAGCTGATGCAGGAATTCGATCTGTCTGTGTCACCAACTTCAGTTGGGACTTCATCTATGCAGAGTATGTCATGGCAGCTGGAAATCATCATCGTTCAAT AGTTTGGCAGATAGCAGAGGATTACTCTCACTGTGAATTCCTAATCCGCCTCCCAGGATATTGCCCAATGCCTGCTTTTCGGGATGTTATTGATGTACCT CTTGTTGTGAGGAGGTTGCACAAAACCCGCAAGGAGGCAAGGAAGGAACTTGGCATCAGTGATGATGTGAAGCTGGTAATCCTTAACTTTGGTGGACAGC CATCTGGGTGGAAGTTGAAGGAGGAGTACTTACCTTCTGGTTGGCTTTGCCTGGTTTGTGGTGCTTCTGACAGCCAGGAGCTTCCACGAAATTTCATAAA GCTTGCAAAAGATGCCTACACACCTGATCTTATTGCAGCATCAGACTGCATGCTTGGGAAAATTGGATATGGCACTGTCAGTGAAGCCCTGGCATTCAAG CTACCATTTGTCTTTGTGCGAAGAGATTATTTCAATGAAGAACCCTTTTTGAGAAATATGCTTGAGTATTACCAGTGTGGTGTTGAGATGATTAGGAGAG ATTTACTCACTGGCCACTGGAAACCTTATCTTGAACGTGCAATTAGTTTGAAACCATGCTATGAGGGAGGCATTAATGGAGGCGAGGTGGCAGCTCACAT TTTGCAGGAGACAGCTATTGGTAAAAACTATGCTTCAGATAAGTTCAGTGGAGCAAGAAGATTGCGAGATGCCATTGTCCTTGGTTATCAATTACAAAGG GTCCCTGGACGAGATATCAGCATCCCAGAATGGTATTCAAGTGCTGAAAATGAACTCAATAAATCTACCGGGTCTCCAACTACCCAAATAATTGAAAATG GATCCCTAACAAGCATATGCACTGATGATTTTGAGATTCTACATGGAGATCTTCAAGGCCTTCCAGATACAAAGAGTTTCTTAAAGAGCTTGGCAGAGCT AGATACTGTATATGACTCTGAGAAGAACTCTGAGAAGCGCCAAATGCGGGAACATAAGGCTGCTGCAGGACTCTTTAATTGGGAGGAAGACATCTATGTG GCAAGAGCACCTGGGAGATTGGATGTAATGGGAGGGATTGCTGACTATTCAGGAAGTCTTGTGTTGCAGATGCCTATTAAAGAAGCCTGTCATGTTGCTG TGCAAAGGAACCATGCAAGTAAACATAGGCTCTGGAAACATGCCCAGGCTCGGCAAAATGCAAAAGGACAGGGGCCTACACCTGTTCTTCAAATAGTATC CTATGGGTCAGAATTAAGCAATCGTGGTCCAACCTTTGACATGGATCTATCTGATTTTATGGATGGAGAGATGCCAATATCATATGACAAGGCAAAAACA TATTTTGCCCAAGATCCATCACAAAAGTGGGCAGCTTATGTTGCAGGGACAATTCTTGTTTTGATGACAGAATTAGGTGTACGCTTTGAGGATAGCATTA GCATGCTGGTTTCTTCAGCAGTCCCCGAGGGAAAAGGGGTATCTTCTTCTGCATCAGTGGAGGTTGCCAGCATGTCTGCTATAGCTGCTGCTCATGGATT AAGTATCAGTCCAAGAGATATTGCTTTGCTCTGCCAAAAGGTAGAGAATCACATTGTTGGAGCTCCATGTGGTGTAATGGATCAGATGACTTCAGCATGT GGTGAAGCCAACAAACTTCTTGCAATGGTGTGCCAGCCTGCAGAGGTTATTGGGCTTGTAGAAATTCCTAGCCATATTCGTTTCTGGGGAATTGATTCAG GAATACGACACAGTGTTGGTGGTGCAGATTATGGATCTGTAAGAATAGGTGCCTTCATGGGTCAAAAGATGATTAAGTCTATAGCATCATCTACTTTGTC CAGATCACTGCCCAGTGCTAATGGGTTAATCCATGACGAGTTGGAGGATCATAGTGTGGATCTAATCAAAGCTGAAGCTTCATTGGATTACTTGTGTAAC TTATCACCACACAGATATGAGGCTCTCTATGCTAAGATGCTTCCTGAATCCATCCTTGGAGAGACCTTTCTGGAGAAGTATATTGATCATAATGATGCTG TCACGATAATTGATGAGAAGCGCACATATGTTGTGAGAGCACCGGCTAATCATCCTATATATGAAAACTTCCGTGTCAAGGCCTTCAAAGCATTGTTAAC TTCCACCAGTTCAGATGAGCAACTTACAGCTCTTGGAGAACTATTGTATCAGTGTCACTATAGCTACAGTGCTTGCGGGCTTGGTTCTGATGGGACAGAT AGGCTTGTGCGGTTGGTACAGGAAATGCAACATGGCAAACCATCAAAATCTGAAGATGGGACTTTATATGGAGCAAAAATAACTGGTGGGGGTTCTGGTG GAACAGTTTGTGTAATCGGTAGGAACTGTCTTAGAAGCAGCCAACAAATTCTGGAGATTCAGCACAGATACAAAGGCGGAACTGGCTATTTGCCATTTAT TTTCGAGGGTTCGTCGCCTGGGTCAGGAAAATTCGGATACTTGAGAATTCGCCGGCCAGTGTCCATAACTTAG
AA sequence Show only first row Show all	>Potri.018G003100.1 pacid=42801140 polypeptide=Potri.018G003100.1.p locus=Potri.018G003100 ID=Potri.018G003100.1.v4.1 annot-version=v4.1 MRIEESDGVSASRKHLVFAYYVTGHGFGHATRVVEVVRNLILAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV KPRESILATEIEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGNHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVP LVVRRLHKTRKEARKELGISDDVKLVILNFGGQPSGWKLKEEYLPSGWLCLVCGASDSQELPRNFIKLAKDAYTPDLIAASDCMLGKIGYGTVSEALAFK LPFVFVRRDYFNEEPFLRNMLEYYQCGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAIGKNYASDKFSGARRLRDAIVLGYQLQR VPGRDISIPEWYSSAENELNKSTGSPTTQIIENGSLTSICTDDFEILHGDLQGLPDTKSFLKSLAELDTVYDSEKNSEKRQMREHKAAAGLFNWEEDIYV ARAPGRLDVMGGIADYSGSLVLQMPIKEACHVAVQRNHASKHRLWKHAQARQNAKGQGPTPVLQIVSYGSELSNRGPTFDMDLSDFMDGEMPISYDKAKT YFAQDPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLSISPRDIALLCQKVENHIVGAPCGVMDQMTSAC GEANKLLAMVCQPAEVIGLVEIPSHIRFWGIDSGIRHSVGGADYGSVRIGAFMGQKMIKSIASSTLSRSLPSANGLIHDELEDHSVDLIKAEASLDYLCN LSPHRYEALYAKMLPESILGETFLEKYIDHNDAVTIIDEKRTYVVRAPANHPIYENFRVKAFKALLTSTSSDEQLTALGELLYQCHYSYSACGLGSDGTD RLVRLVQEMQHGKPSKSEDGTLYGAKITGGGSGGTVCVIGRNCLRSSQQILEIQHRYKGGTGYLPFIFEGSSPGSGKFGYLRIRRPVSIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G003100 [exp]	0	1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.013G040700 [exp]	3.00	0.7721	BZO2.2
AT5G21940			unknown protein		Potri.006G219800 [exp]	19.36	0.7089
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.006G224600 [exp]	22.62	0.7352
AT5G07080			HXXXD-type acyl-transferase fa...		Potri.019G126400 [exp]	27.22	0.6848
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.009G113045 [exp]	31.04	0.7473
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.014G018700 [exp]	35.84	0.7467
AT5G01750			Protein of unknown function (D...		Potri.016G130500 [exp]	42.07	0.6935
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	45.25	0.7066
AT1G30540			Actin-like ATPase superfamily ...		Potri.011G164500 [exp]	45.95	0.6792
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.001G230604 [exp]	47.95	0.6782

Compare expression of checked genes

Potri.018G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.