Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10330 463 / 6e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 303 / 2e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08305 285 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 285 / 3e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 282 / 8e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 275 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 274 / 4e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59200 271 / 7e-85 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 273 / 1e-84 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 265 / 1e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082900 [exp] 739 / 0 AT1G10330 405 / 4e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 310 / 2e-100 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 312 / 5e-100 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G141200 [exp] 290 / 2e-92 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G089400 [exp] 290 / 2e-92 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 293 / 4e-92 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 288 / 3e-91 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G223900 [exp] 286 / 2e-90 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 286 / 2e-89 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030036 [exp] 555 / 0 AT1G10330 436 / 5e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 315 / 5e-101 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031430 [exp] 288 / 4e-93 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 293 / 4e-92 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 290 / 6e-91 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029853 [exp] 284 / 2e-90 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010901 [exp] 282 / 2e-90 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 278 / 4e-88 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 277 / 7e-86 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 276 / 2e-85 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G003300.1 pacid=42801608 polypeptide=Potri.018G003300.1.p locus=Potri.018G003300 ID=Potri.018G003300.1.v4.1 annot-version=v4.1 ATGCCGCCACACCCCCCTGAACTTCTACTCCAACTTCTCCAACATTTTATCAAACACCAAAACCAAGTCAAACAAATCCATTCCCTCCTAACAACCAAAG GCCTCCTCTTTTATAACCCAAACACAAGCCCTAACGACAACTCAAAATGGAAAACTACCCTTCTTTTCAACACTCTAAATAGAGCCTACCTCAATTTCGG ACAACACCAACAAACTCTTCACCTCTTCGCTCTCATGCTTGCCCACCAAACCCCACCGAACAGCCACACCTTCCCTTCCGTAATCAAAGCAGCCACACAT TCTTGCCTCTTTATAGGCACTTCCCTTCACACCCAAGCTATCAATCGTGGGGTTCTTTATGACCCCTTTATACAAACATCATTGTTGGGTATGTACTCGC AGTTTGGTTACTTACTTAATGCCTGCAAGGTGTTTGATGAAATCTCGCACCCATGTATTGTTGAATATAATGCAACGCTTGATGCTTATGCGAAGAATGG TGACATGGGTTCTGCTTGTTGTCTCTTTAAAAGCATGCCTAAGAGGGATGTAGTCTCGTGGACTAGTGTTATTAATGGGTTTGCAAAGAATGGACTTTTT GGTGAGGCAATTAGGCTGTTTAGGGAGATGATGTTGCATGATGATGTAAAGTGTTGTTTTGTTAAACCTAATGAGGCGACATATGTTAGTGTGTTGTCAT CATGTGCTAATTTAGATGAAAGAGGGGTCCTTTGTATTGGGAAGCAAATACATGGGTATATAGTAAGGAATGAGGTTTTTGTTACTGTTTTTATTGGGAC AACATTGATAGATTTTTATGGAAAAGTGGGTTGTTTGAGTAATGCCATTAGAGTTTACAACCAAATGATGGTTAAAAAGGTTTGTACTTGGAATGCTATA ATTTCTTCACTTGCTAATAATGGTAGAGAAGAACAAGCTCTGGACATGTTTAAAAAGATGAAAGGGGAAGGTTTGTGTCCAAATGAAGTCACCTTTATTG CTGTACTTACTGCTTGTGCGCGTGCCAAGCTTGTAGAGATTGGGCTGGAGTTGTTTCAATCAATGGCTGGTGAGTTTGGTCTGGTGCCAATAATGGAGCA TTATGGGTGTGTTGTTGATCTTTTGGGAATGGCAGGGCTGTTGAGGGAAGCTAGTGAATTTATAAGGAGGATGCCTTTCGAGCCGGATGCTTCAGCTTTG GGTGCACTTTTAGGTGCTTGTAAGATTCATGGAGCTATTGATTTGGGAAATGAAGTGGGAAGCAGGTTACTTGAATTGCAGCCACAACATTGTGGTCAAT ATGTGGCTTTATCTAGCATTCATGTTGGGGTGAATAGATGGGGTGTTGCTGCTGATATAAGGAAAACAATGGTGGAGGCTAGAATTAGGATAGTTCCTGC CTGCAGTTTGATTGATTGCAAATGA
AA sequence Show only first row Show all	>Potri.018G003300.1 pacid=42801608 polypeptide=Potri.018G003300.1.p locus=Potri.018G003300 ID=Potri.018G003300.1.v4.1 annot-version=v4.1 MPPHPPELLLQLLQHFIKHQNQVKQIHSLLTTKGLLFYNPNTSPNDNSKWKTTLLFNTLNRAYLNFGQHQQTLHLFALMLAHQTPPNSHTFPSVIKAATH SCLFIGTSLHTQAINRGVLYDPFIQTSLLGMYSQFGYLLNACKVFDEISHPCIVEYNATLDAYAKNGDMGSACCLFKSMPKRDVVSWTSVINGFAKNGLF GEAIRLFREMMLHDDVKCCFVKPNEATYVSVLSSCANLDERGVLCIGKQIHGYIVRNEVFVTVFIGTTLIDFYGKVGCLSNAIRVYNQMMVKKVCTWNAI ISSLANNGREEQALDMFKKMKGEGLCPNEVTFIAVLTACARAKLVEIGLELFQSMAGEFGLVPIMEHYGCVVDLLGMAGLLREASEFIRRMPFEPDASAL GALLGACKIHGAIDLGNEVGSRLLELQPQHCGQYVALSSIHVGVNRWGVAADIRKTMVEARIRIVPACSLIDCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	0	1
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	1.73	0.8941
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	2.82	0.8834	CYP89A27P
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	7.41	0.8695
					Potri.005G218650 [exp]	9.79	0.8734
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	9.94	0.8442
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.012G032100 [exp]	10.24	0.8074
AT4G20190			unknown protein		Potri.001G074300 [exp]	12.96	0.8371
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	15.00	0.8356
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.008G113900 [exp]	15.16	0.8226
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165400 [exp]	18.00	0.8290

Compare expression of checked genes

Potri.018G003300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.