Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24810 956 / 0 ABC1 family protein (.1.2) AT5G50330 171 / 1e-46 Protein kinase superfamily protein (.1.2) AT4G24810 169 / 7e-46 Protein kinase superfamily protein (.1.2.3) AT1G65950 169 / 4e-45 Protein kinase superfamily protein (.1) AT5G64940 155 / 1e-39 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT2G40090 141 / 2e-35 ATATH9 ABC2 homolog 9 (.1) AT3G07700 138 / 5e-34 Protein kinase superfamily protein (.1.2.3) AT5G24970 123 / 5e-29 Protein kinase superfamily protein (.1.2) AT1G79600 120 / 3e-28 Protein kinase superfamily protein (.1) AT1G71810 119 / 7e-28 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003400 [exp] 1253 / 0 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.006G276600 [exp] 1120 / 0 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G000101 [exp] 261 / 3e-84 AT5G24810 225 / 6e-69 ABC1 family protein (.1.2) Potri.015G091000 [exp] 171 / 3e-46 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 168 / 2e-45 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G075100 [exp] 164 / 4e-43 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 156 / 5e-40 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 155 / 2e-39 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.008G067900 [exp] 149 / 2e-38 AT2G40090 823 / 0.0 ABC2 homolog 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026970 [exp] 980 / 0 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 968 / 0 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 785 / 0 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10032628 [exp] 175 / 4e-47 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10043122 [exp] 166 / 5e-44 AT4G24810 696 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 155 / 2e-39 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 142 / 3e-35 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 140 / 2e-34 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 139 / 5e-34 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028292 [exp] 137 / 7e-34 AT2G40090 842 / 0.0 ABC2 homolog 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0013 [poplar] [flax] Beta-lactamase PF00144 [poplar] [flax] Beta-lactamase Beta-lactamase CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.018G003600.3 pacid=42801830 polypeptide=Potri.018G003600.3.p locus=Potri.018G003600 ID=Potri.018G003600.3.v4.1 annot-version=v4.1 ATGGGGTGGGGATACATTTACAGGAGACGTGCGAAAGTATTTACATTGGCCATGATAATTTACATCGATTATAAGGCTTTACAGAAAAGAGAGAAATTCA TGAAGAAACCGAAAAGTGATGCGTTGTGGAAGAAGGCCCATGAGCGGAATGCTAAGCGTGTTTTTAATTTGATGGTAGAGTTGGAGGGTTTGTGGGTGAA ACTTGGACAGTATATGTCCTCACGTGCTGATGTGCTTCCTTCTGCTTTCATTTCAAATCTCAAGCAGTTGCAGGACTCTCTCCCTCCTCGTCCGTTTGAA GAGGTTTGTCACACTATAGAGAAAGAACTAGGGAAATCCACGAAGGAGATTTTCTTGGATTTTGACGAAAATCCTCTGGCGACAGCATCAATTGCACAAG TCCATCGTGCGACATTAATTGATGGGCAGAAGGTGGTTGTTAAAGTTCAACACAAAGACATCAAGAAAATCATATTGGAGGATTTAAAGGATGCAAAATC CATTGTTGACTGGATAGCATGGGCAGAACCGCAGTATAACTTCAGCCCTATGATCGATGAATGGTGCAAAGAAGCACCACAAGAACTCGACTTCAACCAC GAAGCAGAGAATACCAGAACCTTGTCTAAAAATCTTGGCTGCACAAGCAAATATGATAGCAACAAGCCCATCAATCAAGTGGATGTTTTGATTCCAGAGG TTATTCAGTCGACAGAAAAAGTTCTAATTTTGGAATATATGGATGGAATTCGTTTGAATGACTTCGAATCCCTAGAAGCTTGTGGTGCTAACAACCAAAA GATTGTTGAAGAAATCACACGGGCCTTTGCCCATCAAATATATGTTGATCGGTTTTTTAATGGTGACCCTCATCCTGGTAATTTTCTGGTGAGCAAAGAA CCTCCACATCGTCCAATTTTGCTTGACTTTGGGCTGACAAAGAGAATATCAAGCTCTATGAAACAATCACTAGCTAAAATGTTTCTTGCTACTGCCGAGG GGGACCATGTTGCTCTTTTGTCTTCCTTTTCTGAAATGGGACTTAAGCTGCGCCTGGATTTTCCTGAGCAGGCCATGGATTTTATCAGTGTCTTCTTCCG CACGTCAACATCTGCAAGTGAAGCTGCTGAATATGCCAAATCTTTGGGGGAGCGAAGAGCAAGAAACATGAAGGTGCTACAGGAAAAGATGAATCTCAGC CAAAAGGAAGTTAAACGATTTAATCCGATTGATGCATTTCCTGGTGATATGGTAATATTTTCACGGGTTATTGGTCTTCTGAGAGGACTTTCTACCACGT TGGATGCTCGCATAGTCTATCATGATATCATGAGACCATTTGCCGAATCTGTTCTGCAAGAGAAGATTGCCAAGGAGCCATCAGAGAATGCGGAGTGGAT CAATGACACACCAGTTCATTATGATGTGGAGGCAAAGCTGAGGCAGATTTTAATTGAGTTAGGGAATGATGACAAAATACTTGGAATCCAGGTATGTGCC TATAAAGATGGAGAGGTTATTATCGATACTGCTGCTGGAGTGCTTGGTAGATATGATCCTCGCCCAGTACAGCCTGATAGGCTTTTTCCTGTTTTCTCTG TAACAAAGGGCATTGCAGCAGGAATGTTACATTGGCTTGTCGACAATGGAAAACTCAACCTCAATGAAAATATTGCTAATATTTGGCCAGAATTTGGAAC AAACGGAAAGAATCTCATCAAGGTCCACCATGTTCTTAATCATACATCTGGTTTGAAAAATGCTTTGGCCAACCTCAGAGAAGAAAATCCTTTGCTAATG GCTGACTGGGATGAATGTCTGAAACGGATTGCTATGTCAGCACCTGAGACTGAACCTGGCCAGGAGCAGTTGTATCACTATCTGTCGTTTGGCTGGCTTT GTGGTGGAATAATTGAGCTGACTGAGAAGTTGATGGCACTCCTCTCGTGA
AA sequence Show only first row Show all	>Potri.018G003600.3 pacid=42801830 polypeptide=Potri.018G003600.3.p locus=Potri.018G003600 ID=Potri.018G003600.3.v4.1 annot-version=v4.1 MGWGYIYRRRAKVFTLAMIIYIDYKALQKREKFMKKPKSDALWKKAHERNAKRVFNLMVELEGLWVKLGQYMSSRADVLPSAFISNLKQLQDSLPPRPFE EVCHTIEKELGKSTKEIFLDFDENPLATASIAQVHRATLIDGQKVVVKVQHKDIKKIILEDLKDAKSIVDWIAWAEPQYNFSPMIDEWCKEAPQELDFNH EAENTRTLSKNLGCTSKYDSNKPINQVDVLIPEVIQSTEKVLILEYMDGIRLNDFESLEACGANNQKIVEEITRAFAHQIYVDRFFNGDPHPGNFLVSKE PPHRPILLDFGLTKRISSSMKQSLAKMFLATAEGDHVALLSSFSEMGLKLRLDFPEQAMDFISVFFRTSTSASEAAEYAKSLGERRARNMKVLQEKMNLS QKEVKRFNPIDAFPGDMVIFSRVIGLLRGLSTTLDARIVYHDIMRPFAESVLQEKIAKEPSENAEWINDTPVHYDVEAKLRQILIELGNDDKILGIQVCA YKDGEVIIDTAAGVLGRYDPRPVQPDRLFPVFSVTKGIAAGMLHWLVDNGKLNLNENIANIWPEFGTNGKNLIKVHHVLNHTSGLKNALANLREENPLLM ADWDECLKRIAMSAPETEPGQEQLYHYLSFGWLCGGIIELTEKLMALLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.001G364900 [exp]	2.00	0.8622
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	8.30	0.8071
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	9.16	0.7580
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040500 [exp]	9.79	0.7530
AT4G19980			unknown protein		Potri.001G123300 [exp]	10.48	0.7038
					Potri.014G100650 [exp]	11.00	0.7454
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	12.44	0.7773
AT5G41761			unknown protein		Potri.012G031900 [exp]	12.96	0.7040
AT1G79420			Protein of unknown function (D...		Potri.008G081700 [exp]	14.73	0.6875
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	15.42	0.7190

Compare expression of checked genes

Potri.018G003600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.