Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) AT4G31340 456 / 5e-159 myosin heavy chain-related (.1.2) AT4G30090 164 / 6e-46 EMB1353 embryo defective 1353 (.1) AT1G28410 52 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276900 [exp] 694 / 0 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2) Potri.006G076700 [exp] 172 / 2e-49 AT4G31340 157 / 5e-44 myosin heavy chain-related (.1.2) Potri.004G048500 [exp] 54 / 7e-08 AT1G28410 186 / 9e-58 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020166 [exp] 511 / 5e-180 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2) Lus10026967 [exp] 501 / 3e-176 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2) Lus10041099 [exp] 444 / 3e-154 AT4G31340 397 / 3e-136 myosin heavy chain-related (.1.2) Lus10036424 [exp] 436 / 2e-151 AT4G31340 409 / 3e-141 myosin heavy chain-related (.1.2) Lus10013982 [exp] 49 / 4e-06 AT1G28410 201 / 1e-63 unknown protein Lus10015403 [exp] 48 / 7e-06 AT1G28410 189 / 9e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G003700.10 pacid=42801027 polypeptide=Potri.018G003700.10.p locus=Potri.018G003700 ID=Potri.018G003700.10.v4.1 annot-version=v4.1 ATGGCGGCCTCAAAACTCGCTTTTCTGTCAATTCTCTTCGTTTTTGCCCTAATTTTCACCGCCGTCGGTGTTAGGGCTGATGTTGATGATGATAATACAG CTGAGTCGGCTGCTGCCGTTGATTTGTCCGCGTTGAAGATCGAACTTGATCAACTCAAGTCTAAGATCCACGCACACGAATCTCATATCGATGAGAAAAC AAAAGAATTGAATGGTAAGGATGTCATGATAGCGCAGAAGGAGACAATTATTCAAGAGAAAGTTGATAGCATTGCGTCGCTGCAGAGTGAAATTTCATCT CTTAAGAAAAAAGGGAAGATTGATGCTCAGGAGCTAGTTGGGAAGGCGCATGCACGTGCAGGCGAGCTAGAGAAACAGATGGAGAAGCTCTCTAAGGAAT TAGAAACACAACAACAGGAAAACGAGGCCCTGGAAGCCAGAGCAAGTGAAGCTGAAAAGAAGATTAGTGAATTGAACTTTAAGCTAGCAGATCTTGAAAA GATTAATGTGGAGCAGAAAAGCAAAATCCGTAAAACAGAACGTGCTCTTAAAATTGCTGAGGAAGAACTGATAAAAACAAAATCTGAGGCCATTTCAAAG GCCAAAGAGTTAATGGAGGTTCACGGGGCGTGGCTTCCACCTTGGCTTGCTGTACAGTTGATTCGTTGGCAGTCTCTGGCTCAGACACATTGGAGTGAGC ATGGAAAACCTACCATGGAACTGGCAATTCAAAAGGCCCTGGAGAAAAAAGCCCAAGCTGAAAAGTGGGCTGAGCCACATGTGGAAACAATTAAAACTAA ATGGGTCCCAGCTATTAAAGAGCAATGGGTTGTGATTACTACACAAGTTAAGCCTCATGTGCAATCATTAACTGCTAAAACAGTTCAAATTTATGAGGCC TCAAAGACTACAGTCACTCCACACATCATCAGAGTACAAGAAATAGCTGATCCTTACTTTCAGGAAGCTAAAAAGTTCAGCAAGCCATATATTGATCAGG TTGCTACCATGACAAAGCCCCATGTTGATAAAGTTAAAGTGGCTTTGAAGCCCTACACGAAAGAGGCAGTTCATGCATATGGGAAGTTTTTAGAATCTGC AACCACATACCACAATCAGGTGCAAGTCACTGTACAAGAGACACTGGAAAAGCATGAGCTCACAAAACCACTTGCAATGAAAGAGTTGATCTGGTTCATT GCCTCTGCTTTGTTGGCCCTACCTGTCATTATTTTGGCCAGAGCTTGTTCTTCCATCTTCTGCCAAAAGGCAAAGAAACCTGCTAGAAATGCTCACGCCA ATCCCTCTCGTCGCAAGGCTAAACGGGGGCATTCAGACAAGTAG
AA sequence Show only first row Show all	>Potri.018G003700.10 pacid=42801027 polypeptide=Potri.018G003700.10.p locus=Potri.018G003700 ID=Potri.018G003700.10.v4.1 annot-version=v4.1 MAASKLAFLSILFVFALIFTAVGVRADVDDDNTAESAAAVDLSALKIELDQLKSKIHAHESHIDEKTKELNGKDVMIAQKETIIQEKVDSIASLQSEISS LKKKGKIDAQELVGKAHARAGELEKQMEKLSKELETQQQENEALEARASEAEKKISELNFKLADLEKINVEQKSKIRKTERALKIAEEELIKTKSEAISK AKELMEVHGAWLPPWLAVQLIRWQSLAQTHWSEHGKPTMELAIQKALEKKAQAEKWAEPHVETIKTKWVPAIKEQWVVITTQVKPHVQSLTAKTVQIYEA SKTTVTPHIIRVQEIADPYFQEAKKFSKPYIDQVATMTKPHVDKVKVALKPYTKEAVHAYGKFLESATTYHNQVQVTVQETLEKHELTKPLAMKELIWFI ASALLALPVIILARACSSIFCQKAKKPARNAHANPSRRKAKRGHSDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	0	1
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	2.23	0.7065
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.002G070200 [exp]	4.89	0.7087	RBP1.2
AT2G32730			26S proteasome regulatory comp...		Potri.001G314300 [exp]	5.91	0.6890
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	6.78	0.7687
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	8.83	0.7322	RPT4.2
AT1G11200			Protein of unknown function (D...		Potri.004G035900 [exp]	11.61	0.6332
AT3G57790			Pectin lyase-like superfamily ...		Potri.016G051200 [exp]	12.64	0.6133
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Potri.017G116600 [exp]	16.43	0.6674	DWF7.3
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	20.27	0.7229
AT1G43130		LCV2	like COV 2 (.1)		Potri.002G065800 [exp]	21.35	0.6385

Compare expression of checked genes

Potri.018G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.